View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_low_18 (Length: 524)
Name: NF2071_low_18
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_18 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0009 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 298
Target Start/End: Complemental strand, 146445 - 146180
Alignment:
| Q |
33 |
aatgaatattaattatctcactttttcttatgtgttgcttacttttctgttacccctagcttcatcaacaattttatatcacccaaaacagattccagct |
132 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
146445 |
aatgaacactaattatctcactttttcttatgtgttaattactttgttgttacccctagcatcatcaacaaattcatatcactcaaaacagattccagct |
146346 |
T |
|
| Q |
133 |
atctatgtttttggtgattcccttgttgacagtggtaacaacaattatcttccaattcaatcaaatgcaaaatttcctccttacggtatagactttgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
146345 |
atctatgtttttggtgattcccttgttgacagtggtaacaacaattatcttccaattcaatcaaatgcaaaatttcctccttacggtatagactttgatg |
146246 |
T |
|
| Q |
233 |
gtggcaaacctactggtcgatacactaatggaaaaactgtggttgattacttaggtgagaaaacac |
298 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
146245 |
gtggcaaacctactggtcgaaacactaatggaaaaactgtggttgattacttaggtgagaaaacac |
146180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 43 - 297
Target Start/End: Complemental strand, 36700483 - 36700229
Alignment:
| Q |
43 |
aattatctcactttttcttatgtgttgcttacttttctgttacccctagcttcatcaacaattttatatcacccaaaacagattccagctatctatgttt |
142 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36700483 |
aattatctcactttttcttatgtgttaattactttgttgttacccctagcatcgtcaacaatttcatatcacccaaaacatattccagctatctatgttt |
36700384 |
T |
|
| Q |
143 |
ttggtgattcccttgttgacagtggtaacaacaattatcttccaattcaatcaaatgcaaaatttcctccttacggtatagactttgatggtggcaaacc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
36700383 |
ttggtgattcccttgttgacagtggtaacaacaattatcttccaattctatcaaatgcaaaatttcctccttacggtatagactttggtggtgccaaacc |
36700284 |
T |
|
| Q |
243 |
tactggtcgatacactaatggaaaaactgtggttgattacttaggtgagaaaaca |
297 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
36700283 |
tactggtcgatgcactaatggaaaaacaactgttgtttacataggtgagaaaaca |
36700229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 36700218 - 36700162
Alignment:
| Q |
446 |
attctcttttctcaaattaatattggtattgatgtgtagtgtctagtgtccggactt |
502 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
36700218 |
attctcttttctcaaattaatatcggtattgatgtgtagtgtccagtgtccggactt |
36700162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 48100349 - 48100387
Alignment:
| Q |
142 |
tttggtgattcccttgttgacagtggtaacaacaattat |
180 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
48100349 |
tttggtgattcacttgttgacagtggcaacaacaattat |
48100387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14781 times since January 2019
Visitors: 8422