View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_2 (Length: 803)
Name: NF2071_low_2
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 53056622 - 53056929
Alignment:
| Q |
8 |
gacatcatcaggatacctggtgtttgaagatgtcctcatgcatctgcattgtctttttgatggattctatgttgtttctgtcaagcatcctcctatccat |
107 |
Q |
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| T |
53056622 |
gacatcttcaggatacctggtgtttgaagatgtcctcatgcatctgcattgtctttttgatggattctatgttgtttctgtcaagcatcctcctatccat |
53056721 |
T |
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| Q |
108 |
gatgggacctggcaatttattgattctagtcctatgatggttattggtcagcctccctttgttctgataataatgctcccacagctaacttattgctctt |
207 |
Q |
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| T |
53056722 |
gatgggaccttgcaatttattgattctagtcctatgatggttattggtcagcctccctttgttctgataataatgctcccacagctaacttattgctctt |
53056821 |
T |
|
| Q |
208 |
taccaaggttgctacaagatttagggaacattcaattttggttcccatacctaaatacaagaattaaaaccatcattaatcatgtaaggttaaacaacat |
307 |
Q |
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| T |
53056822 |
taccaaggttgctacaagatttatggaacattcaattttggttcccatacctaaatacaataattaaaaccatcattaatcatgtaaggttaaacaactt |
53056921 |
T |
|
| Q |
308 |
aattaagc |
315 |
Q |
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| T |
53056922 |
aattaagc |
53056929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 374 - 641
Target Start/End: Original strand, 53056988 - 53057258
Alignment:
| Q |
374 |
gttttcatgcaggtttgataggctatcctgaagaacttatgaaaattagttgaaaatagtctttagataggtcatgatctctcaagctacaatgtgaaga |
473 |
Q |
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| T |
53056988 |
gttttcatgcaggttttataggctatcctgaagaacttatgaaaattagttgaaaatagtctatagataggtcatgatctctcaagctacaatgtgaaga |
53057087 |
T |
|
| Q |
474 |
tggggacaacattcagttttnnnnnnnn---gaacaattaaaaggaactagaaactcaaattttggaactgttgagatcaaattagtaggtaaccatgta |
570 |
Q |
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| T |
53057088 |
tggggacaacattcagtttaaaaaaaaaaaagaacaattaaaaggaactagaaactcaaattttggaactgttgagatcaaattagtaggtaaccatgta |
53057187 |
T |
|
| Q |
571 |
tagctgagaccacaatcagtcagtgcctttggcaagaaactgaaacaaaaatccaacaggaccagtcatga |
641 |
Q |
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| T |
53057188 |
tagctgagaccacaatcagtcagtgcctttggcaagaaactgaaacaaaaatccaacaggaccggtcatga |
53057258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 44319959 - 44320004
Alignment:
| Q |
387 |
tttgataggctatcctgaagaacttatgaaaattagttgaaaatag |
432 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
44319959 |
tttgataagctatcctagagaacttatgaaaattagttgaaaatag |
44320004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 15909439 - 15909366
Alignment:
| Q |
19 |
gatacctggtgtttgaagatgtcctcatgcatctgcattgtctttttgatggattctatgttgtttctgtcaag |
92 |
Q |
| |
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|||||||||| ||||||||||||||| || ||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
15909439 |
gatacctggtttttgaagatgtcctcttgtatctgcattgtctttctaatggattccatgttgtttctgtcaag |
15909366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 429
Target Start/End: Complemental strand, 9602712 - 9602678
Alignment:
| Q |
395 |
gctatcctgaagaacttatgaaaattagttgaaaa |
429 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
9602712 |
gctatcctgaagaacttatgaaaataagttgaaaa |
9602678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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