View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_20 (Length: 520)

Name: NF2071_low_20
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_20
NF2071_low_20
[»] chr5 (3 HSPs)
chr5 (19-498)||(14120625-14121121)
chr5 (172-263)||(14302231-14302322)
chr5 (172-237)||(33109985-33110050)
[»] chr8 (4 HSPs)
chr8 (172-281)||(8862410-8862520)
chr8 (197-258)||(12197887-12197948)
chr8 (197-258)||(12442315-12442376)
chr8 (172-246)||(10248354-10248428)
[»] chr4 (3 HSPs)
chr4 (174-274)||(39420825-39420925)
chr4 (190-255)||(19673309-19673374)
chr4 (196-257)||(48098544-48098605)
[»] chr7 (1 HSPs)
chr7 (174-263)||(8745357-8745445)
[»] chr2 (2 HSPs)
chr2 (177-258)||(34230410-34230491)
chr2 (172-240)||(41086577-41086645)
[»] scaffold1384 (1 HSPs)
scaffold1384 (172-240)||(1443-1511)
[»] scaffold0063 (1 HSPs)
scaffold0063 (176-255)||(58339-58418)
[»] chr3 (1 HSPs)
chr3 (172-251)||(28937500-28937579)
[»] chr1 (1 HSPs)
chr1 (219-280)||(6583073-6583134)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Original strand, 14120625 - 14121121
Alignment:
Q  19 agtaaccatgtgagttggttattaattttcattgtctgatatt-aaataaaaattgttcaaaaataatttattgaaaatataatatcattcattcgaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14120625 agtaaccatgtgagttggttattaattttcattgtctgatatttaaataaaaattgttcaaaaataatttattgaaaatataatatcattcattcgatct 14120724  T
Q  118 caaattaataatcgagattaatcatattgcatgattttgttgaatcccactcttacctaaaacaaactcctacacgagaacgaccattataaaaacaata 217  Q
    ||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||    
T  14120725 caaatcaataatcgagattcatcatattgcatgattttgttggatcccactcctacctaaaacaaactcctacacgaaaacgatcattataaaaacgata 14120824  T
Q  218 tccaataccacccgtcgtcactattcacctccaaagaaaaatacccaacaccaaagccgagccaattaaaaa----------------ataatattattt 301  Q
    | ||| ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||                ||||||||||||    
T  14120825 ttcaacaccacccgtcgtcactattcacctccaaaaaaaaatatccaacactaaagccgagccaattaaaaaataatttattgaaaatataatattattt 14120924  T
Q  302 attcgatctcaaatcaataaacgagattaatcgttggatgattttgttggatcccactccaatctctatggatagatttgaagtggaagaaggtcccaaa 401  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14120925 attcaatctcaaatcaataaacgagattaatcgttggatgattttgttggatcccactcctatctctatggatagatttgaagtggaagaaggtcccaaa 14121024  T
Q  402 gctaggatgataggaaagtatataaggtcccacgttgtcgggttgatgtatcatggggtaacacattgagaaagacacgttaacagcagcttctgtg 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121025 gctaggatgataggaaagtatataaggtcccacgttgtcgggttgatgtatcatggggtaacacattgagaaagacacgttaacagcagcttctgtg 14121121  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 14302231 - 14302322
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaataccc 263  Q
    |||||||||| | |||| | ||| |||||||| | ||||||| |||||||| |||||| |||||||||| ||| | ||||||||||||||||    
T  14302231 acctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaataccc 14302322  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 33109985 - 33110050
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtca 237  Q
    ||||||||||||| ||| ||||| |||||||| | ||||||| |||||||||||||||| ||||||    
T  33109985 acctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaataccacccatcgtca 33110050  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 8862410 - 8862520
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatcc-aataccacccgtcgtcactattcacctccaaagaaaaatacccaacacca 270  Q
    |||||||||  |||| ||||||||||| |||||| |||||||||||||| || ||||| ||||||||||| | ||  ||||||||||| ||||| |||||    
T  8862410 acctaaaactgactcttacacgagaacaaccattgtaaaaacaatatccaaacaccacacgtcgtcactactgactcccaaagaaaaacacccaccacca 8862509  T
Q  271 aagccgagcca 281  Q
    |||| ||||||    
T  8862510 aagctgagcca 8862520  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12197887 - 12197948
Alignment:
Q  197 acgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaa 258  Q
    ||||||| || |||||| |||||||  ||||||||||||||||| ||||| |||||||||||    
T  12197887 acgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12197948  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12442315 - 12442376
Alignment:
Q  197 acgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaa 258  Q
    ||||||| || |||||| |||||||  ||||||||||||||||| ||||| |||||||||||    
T  12442315 acgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12442376  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 10248354 - 10248428
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacc 246  Q
    ||||||||||||||||| ||||| |||||||| | ||||||| | |||| | | ||||| ||||||||| |||||    
T  10248354 acctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacc 10248428  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 39420825 - 39420925
Alignment:
Q  174 ctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaatacccaacaccaaag 273  Q
    |||||||  |||||||||||||||| ||||   || |||| |||||||| ||||||||||||||||| ||||  ||||||||||| |||||||||| |||    
T  39420825 ctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcacacccaaagaaaaagacccaacaccgaag 39420924  T
Q  274 c 274  Q
    |    
T  39420925 c 39420925  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 19673374 - 19673309
Alignment:
Q  190 cacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaa 255  Q
    ||||| || ||||| | ||||| |||||||||| |||| |||||||||||| ||||| ||||||||    
T  19673374 cacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaa 19673309  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 48098605 - 48098544
Alignment:
Q  196 aacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaa 257  Q
    |||||||| | ||||||| |||||||  || |||||||||||||| ||||| ||||||||||    
T  48098605 aacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 8745445 - 8745357
Alignment:
Q  174 ctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaataccc 263  Q
    |||| |||||||||| ||||| |||||||| |  ||||||||||||||| |||| || ||||||||| ||||| ||||||||||| ||||    
T  8745445 ctaacacaaactccttcacga-aacgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacaccc 8745357  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 34230491 - 34230410
Alignment:
Q  177 aaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaa 258  Q
    ||||| |||| | ||||| |||||||| ||||||||| |||||||| | |||||||||  |||| |||||||||||||||||    
T  34230491 aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaagaaaaa 34230410  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 41086577 - 41086645
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcacta 240  Q
    |||||||||| || |||  |||| | |||||| | ||||||| |||||||||||||||| |||||||||    
T  41086577 acctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcacta 41086645  T

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Target: scaffold1384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 1443 - 1511
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcacta 240  Q
    |||||||||  |||||||||||||||| |||| | ||||||| |||||||| ||||| |||||||||||    
T  1443 acctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtcacta 1511  T

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Target: scaffold0063 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 58418 - 58339
Alignment:
Q  176 aaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaa 255  Q
    |||||| |||||| ||||| |||||||||| |||||   |||||||| || |||||||||||||| ||||  ||||||||    
T  58418 aaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 28937500 - 28937579
Alignment:
Q  172 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaa 251  Q
    |||||||||| || ||| ||||| |  ||||| | ||||||| |||||||||||||||| ||| ||||| ||||||||||    
T  28937500 acctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaa 28937579  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 6583073 - 6583134
Alignment:
Q  219 ccaataccacccgtcgtcactattcacctccaaagaaaaatacccaacaccaaagccgagcc 280  Q
    |||| ||||| ||| |||| || ||||| ||||||||||| ||||||||||||||| |||||    
T  6583073 ccaacaccactcgttgtcattactcacccccaaagaaaaacacccaacaccaaagctgagcc 6583134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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