View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_21 (Length: 482)
Name: NF2071_low_21
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 46919671 - 46919979
Alignment:
| Q |
1 |
ttaaaaattacaaaaataaactctatgcttcttcgatacatatttatgggtatctacgaagtatctgatacatatctgacaaacacatcttcatttgaga |
100 |
Q |
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| T |
46919671 |
ttaaaaattacaaaaataaactctatgctccttcgatacatatttatgggtatctacgaagtatctgatacatatccgacaaacacatcttcatttgaga |
46919770 |
T |
|
| Q |
101 |
gtatccaaatttcattggagtagggatacacattgggagtaggaagtaaattcttttggatcttgatgagagattggagacatcgactaagaacaatcac |
200 |
Q |
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| T |
46919771 |
gtatccaaatttcattggagtaggggtacacattgggagtaggaagtaaattcttttggatcttgatgagagattggagacatcgactaagaacaatcac |
46919870 |
T |
|
| Q |
201 |
acaaagaccatttgacaatatgtctttaccaaacacttttagatataaagatttttgacttgtaagtgtttcaaccttcaattttctatcaattgcgaca |
300 |
Q |
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| T |
46919871 |
acaaagaccatttgacaatatgtctttaccaaacacttttagatataaagatttttgacttgtaagtgtttcaaccttcaattttctatcaattgcgaca |
46919970 |
T |
|
| Q |
301 |
ctttgttca |
309 |
Q |
| |
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||||||||| |
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| T |
46919971 |
ctttgttca |
46919979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 331 - 482
Target Start/End: Original strand, 46920168 - 46920319
Alignment:
| Q |
331 |
ttataacctatgtgagttaaatcacacaaggtttataacgagcgtaagttagtttacgcaacgtgacttaagtctcgca-ggtatttttagaagtttggt |
429 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
46920168 |
ttataacctatgtgagttaactcacacaaggtttataacgagcgtatgttaatttacgcaaagtgacttaagtctcgcagggtatttttagaagtttggt |
46920267 |
T |
|
| Q |
430 |
tatgagcgaacaannnnnnnatcgagaagagcataatttctcaatttagctcc |
482 |
Q |
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| T |
46920268 |
taggagcgaacaa-ttttttatcaagaagagcataatttctcaatttagctcc |
46920319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 439
Target Start/End: Original strand, 46150397 - 46150501
Alignment:
| Q |
337 |
cctatgtgagttaaatcacacaaggtttataacgagcgtaagttagtttacgcaacgtgacttaagtctcgca--ggtatttttagaagtttggttatga |
434 |
Q |
| |
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|||| ||||||||| |||| |||| |||||||| |||| ||||| | ||||| |||||||||||| |||| |||||||||| |||||||||| || |
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| T |
46150397 |
cctacgtgagttaattcacgcaagatttataacatgcgtgagttaactcacgcagcgtgacttaagtgacgcattggtatttttaaaagtttggttggga |
46150496 |
T |
|
| Q |
435 |
gcgaa |
439 |
Q |
| |
|
||||| |
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|
| T |
46150497 |
gcgaa |
46150501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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