View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_24 (Length: 479)
Name: NF2071_low_24
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 39228251 - 39227786
Alignment:
| Q |
1 |
atctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
39228251 |
atctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactggatatatcaaacttgaatgttt |
39228152 |
T |
|
| Q |
101 |
ctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228151 |
ctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctca |
39228052 |
T |
|
| Q |
201 |
tttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228051 |
tttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaatttt |
39227952 |
T |
|
| Q |
301 |
ggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227951 |
ggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatac |
39227852 |
T |
|
| Q |
401 |
cttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
466 |
Q |
| |
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|
| T |
39227851 |
cttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
39227786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 25547450 - 25546985
Alignment:
| Q |
1 |
atctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatattt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
25547450 |
atctccaactacatgtccctttgtactacttggtatgatattcaatgtgacacaaacaatagttctgttttgtcactagatatatcaaacttgaatgttt |
25547351 |
T |
|
| Q |
101 |
ctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547350 |
ctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctca |
25547251 |
T |
|
| Q |
201 |
tttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaatttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547250 |
tttgaaagagcttgaagttcttgatgcttacaacaatgagttcaattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaatttt |
25547151 |
T |
|
| Q |
301 |
ggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547150 |
ggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcatac |
25547051 |
T |
|
| Q |
401 |
cttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547050 |
cttttgagcttggaaatcttactaatcttacacaccttttgttaggttattacaatgagtttgatg |
25546985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
352 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
417 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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|
| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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