View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_26 (Length: 472)

Name: NF2071_low_26
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_26
NF2071_low_26
[»] chr1 (8 HSPs)
chr1 (104-459)||(32658572-32658926)
chr1 (157-459)||(32583063-32583365)
chr1 (104-459)||(32632852-32633206)
chr1 (4-280)||(32600657-32600930)
chr1 (1-194)||(32582870-32583063)
chr1 (353-459)||(32600927-32601033)
chr1 (15-105)||(32632091-32632182)
chr1 (34-105)||(32657992-32658063)
[»] chr6 (1 HSPs)
chr6 (111-448)||(26399487-26399822)
[»] chr8 (6 HSPs)
chr8 (174-459)||(41148957-41149230)
chr8 (111-459)||(41165097-41165432)
chr8 (286-451)||(41175512-41175676)
chr8 (4-105)||(41147816-41147917)
chr8 (167-252)||(41175399-41175491)
chr8 (114-182)||(41148810-41148877)
[»] chr5 (2 HSPs)
chr5 (251-448)||(21014733-21014918)
chr5 (111-222)||(21014924-21015034)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 104 - 459
Target Start/End: Original strand, 32658572 - 32658926
Alignment:
Q  104 agttagcagcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgcataattaagt 203  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  32658572 agttagcagcaagctgagagtttggaattatatatatattgttttaggaaagaaacctgtagattgtgattatatatttattatgaatgctgaattaagt 32658671  T
Q  204 acattgtaatgctaatcataaatacaataaaaagataactggccattcatgtgaaaacattctggttgaggatatgaaacgcacaaaaaatccaatgtgt 303  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  32658672 acatcgtaatgctaatcataaatacaataaaaagataactagccattcatgtgaaaacattctggttcaggatatgaaacgcacaaaaaatccaatgagt 32658771  T
Q  304 aaaattcatgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtg 403  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32658772 aaaa-tcatgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtg 32658870  T
Q  404 ccctcagcatctgaacaaaaatgtcctggtatcctttatactccttcccctttgat 459  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32658871 cccgcagcatctgaacaaaaatgtcctggtctcctttatactccttcccctttgat 32658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 157 - 459
Target Start/End: Original strand, 32583063 - 32583365
Alignment:
Q  157 aaccggtagattgtgattatatatttattatgaatgcataattaagtacattgtaatgctaatcataaatacaataaaaagataactggccattcatgtg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32583063 aaccggtagattgtgattatatatttattatgaatgcataattaagtacattgtaatgctaatcataaatacaataaaaagataactagccattcatgtg 32583162  T
Q  257 aaaacattctggttgaggatatgaaacgcacaaaaaatccaatgtgtaaaattcatgtataaaatcattatgtgtagtgaaaatataccttggatgatga 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32583163 aaaacattctggttgaggatatgaaacgcacaaaaaatccaatgtgtaaaattcatgtataaaatcattatgtgtagtgaaaatataccttggatgatga 32583262  T
Q  357 tccacggtttggttctgcatgctttctgaccgacagaacatctcgtgccctcagcatctgaacaaaaatgtcctggtatcctttatactccttccccttt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32583263 tccacggtttggttctgcatgctttctgaccgacagaacatctcgtgccctcagcatctgaacaaaaatgtcctggtatcctttatactccttccccttt 32583362  T
Q  457 gat 459  Q
    |||    
T  32583363 gat 32583365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 104 - 459
Target Start/End: Original strand, 32632852 - 32633206
Alignment:
Q  104 agttagcagcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgcataattaagt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  32632852 agttagcagcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattatgattatatatttattatgaatgcagaattaagt 32632951  T
Q  204 acattgtaatgctaatcataaatacaataaaaagataactggccattcatgtgaaaacattctggttgaggatatgaaacgcacaaaaaatccaatgtgt 303  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  32632952 acattgtaatgctaatcataaatacaataaaaacataactagccattcatgtgaaaacattctggttcaggatacaaaacgcacaaaaaatccaatgtgt 32633051  T
Q  304 aaaattcatgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtg 403  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32633052 aaaa-tcatgtataaaatcattatgtgtggtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctgaccgacagaacatcttgtg 32633150  T
Q  404 ccctcagcatctgaacaaaaatgtcctggtatcctttatactccttcccctttgat 459  Q
    |||| ||| ||||||||||||||||||||  | |||||||||||||||||||||||    
T  32633151 cccttagcctctgaacaaaaatgtcctggccttctttatactccttcccctttgat 32633206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 32600657 - 32600930
Alignment:
Q  4 atcttcaccaactgtaaagcataaagtttcagaaatttcagtagatattttttgcataaaacttaaataaaatttcttcatttagatcttgtcaactagt 103  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||    
T  32600657 atcttccccatctgtaaagcataaagtttcagaaaattcagtagatattttttgtataacacttgaataaaatttcttcttttagatcttgtcaactagt 32600756  T
Q  104 agttagcagcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgcataattaagt 203  Q
    ||||||||| ||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  32600757 agttagcaggaagctgagagtttggaattttatatatatt---ttaggaaagaaacctgtagattgtgattatatatttattatgaatgcagaattaagt 32600853  T
Q  204 acattgtaatgctaatcataaatacaataaaaagataactggccattcatgtgaaaacattctggttgaggatatga 280  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  32600854 acattgtaatgctaatcataaatacaataaaaacataactagccattcatgtgaaaacattctggttcaggatatga 32600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32582870 - 32583063
Alignment:
Q  1 tgtatcttcaccaactgtaaagcataaagtttcagaaatttcagtagatattttttgcataaaacttaaataaaatttcttcatttagatcttgtcaact 100  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32582870 tgtatcttcaccaaatgtaaagcataaagtttcagaaaattcagtagatattttttgcataaaacttaaataaaatttcttcttttagatcttgtcaact 32582969  T
Q  101 agtagttagcagcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32582970 agtagttagcagcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgca 32583063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 353 - 459
Target Start/End: Original strand, 32600927 - 32601033
Alignment:
Q  353 atgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtgccctcagcatctgaacaaaaatgtcctggtatcctttatactccttccc 452  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  32600927 atgatccacagtttggttctgcatgctttctgaccgacacaacatctcatgccctcagcgtctgaacaaaaatgtcctggcctcctttatactccttccc 32601026  T
Q  453 ctttgat 459  Q
    |||||||    
T  32601027 ctttgat 32601033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 32632091 - 32632182
Alignment:
Q  15 ctgtaaagcataa-agtttcagaaatttcagtagatattttttgcataaaacttaaataaaatttcttcatttagatcttgtcaactagtag 105  Q
    |||||||||| || || |||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  32632091 ctgtaaagcacaacagattcagaaaattcagtagatattttttgcataacacttgaataaaatttcttcttttagatcttgtcaactagtag 32632182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 32657992 - 32658063
Alignment:
Q  34 agaaatttcagtagatattttttgcataaaacttaaataaaatttcttcatttagatcttgtcaactagtag 105  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||    
T  32657992 agaaaattcagtagatattttttgcataacacttaaataaaatttcttcttttagatcttttcaactagtag 32658063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 111 - 448
Target Start/End: Original strand, 26399487 - 26399822
Alignment:
Q  111 agcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgcataattaagtacattgt 210  Q
    |||||||||||| |||||||||| || | |||| ||| ||||||||||||| ||||||| || ||||| |||||||   | ||| |||||||||||||||    
T  26399487 agcaagctgagattttggaattt-atgtgtattatttaaggaaagaaaccgatagattgcgaatatatctttattaaatacgcagaattaagtacattgt 26399585  T
Q  211 aatgctaatcataaatacaataaaaagataactggccattcatgtgaaaacattctggttgaggatatgaaacgcacaaaaaatccaatgtgtaaaattc 310  Q
    ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  26399586 aatgctaatcataaatacaataaaaagataactagtcattcatgcgaaaacattctggttcaggatatgaaacgcacaaaaaatccaatgtgtaaaa-tc 26399684  T
Q  311 atgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtgccctcag 410  Q
    |||||||||||||||||||| | ||||| |||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||| |||    
T  26399685 atgtataaaatcattatgtgcattgaaattataccttcgatgatgacccactgtctggttctgcatgctttctgaccgacagaacatctcttgcccacag 26399784  T
Q  411 catctgaacaaaaatgtcctggtatcctttatactcct 448  Q
    ||||||| | |||| |||||||   |||||||||||||    
T  26399785 catctgatctaaaaagtcctggccacctttatactcct 26399822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 174 - 459
Target Start/End: Original strand, 41148957 - 41149230
Alignment:
Q  174 tatatatttattatgaatgcataattaagtacattgtaatgctaatcataaatacaataaaaagataactggccattcatgtgaaaacattctggttgag 273  Q
    ||||||||||||| |   ||| ||||||||||||||||||||||||||||| |||||||||||  ||||| |||| ||||||||||||| ||||||| ||    
T  41148957 tatatatttattacgttggcagaattaagtacattgtaatgctaatcataattacaataaaaatttaactagccactcatgtgaaaacaatctggttcag 41149056  T
Q  274 gatatgaaacg-cacaaaaaatccaatgtgtaaaattcatgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttct 372  Q
    ||||||||| | ||||||||||| |||||             |||||||||||||||| | ||||| |||||||| ||||| ||||||| ||||||||||    
T  41149057 gatatgaaatgacacaaaaaatctaatgt-------------ataaaatcattatgtgcattgaaattataccttcgatgaagatccactgtttggttct 41149143  T
Q  373 gcatgctttctgaccgacagaacatctcgtgccctcagcatctgaacaaaaatgtcctggtatcctttatactccttcccctttgat 459  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||| |||  ||||||||| ||||||| |||||||    
T  41149144 gcatgctttctgaccgacagaacgtctcttgccctcagcatctgaaaaaaaaagtcatggcttcctttatagtccttccactttgat 41149230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 111 - 459
Target Start/End: Original strand, 41165097 - 41165432
Alignment:
Q  111 agcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgcataattaagtacattgt 210  Q
    |||||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||| ||||||| |||||||           |||||  ||| | |    
T  41165097 agcaagctgagattttggaattt-acatatattattttaggaaagaaaccgatagattgcgattatacatttattt----------attaa--acactat 41165183  T
Q  211 aatgctaatcataaatacaataaaaagataactggccattcatgtgaaaacattctggttgaggatatgaaacg-cacaaaaaatccaatgtgtaaaatt 309  Q
    ||||||||||||||||||||| ||||| ||| | | |||||||||||||||| ||||||| |||||||||| |  ||||||| |||||||||| |||||     
T  41165184 aatgctaatcataaatacaatcaaaagttaagtagtcattcatgtgaaaacaatctggttcaggatatgaatcaacacaaaatatccaatgtgcaaaat- 41165282  T
Q  310 catgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtgccctca 409  Q
    ||||||||||||||||||||| | ||||| |||||||| || |||||||||| ||||||||| ||   |||||| | ||||| ||| |||| ||||||||    
T  41165283 catgtataaaatcattatgtgcattgaaattatacctttgaagatgatccactgtttggttcggcgcactttctcatcgacaaaacgtctcttgccctca 41165382  T
Q  410 gcatctgaacaaaaatgtcctggtatcctttatactccttcccctttgat 459  Q
    | ||||||||||||| || ||||  ||||||||||||||||| |||||||    
T  41165383 gtatctgaacaaaaaagttctggcctcctttatactccttccactttgat 41165432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 451
Target Start/End: Original strand, 41175512 - 41175676
Alignment:
Q  286 acaaaaaatccaatgtgtaaaattcatgtataaaatcattatgtgtagtgaaaatataccttggatgatgatccacggtttggttctgcatgctttctga 385  Q
    ||||||||||||||| |||| || | |||||||||| |||| ||| | ||||| ||||||| ||| |||||||||| ||||||||| || |||||||| |    
T  41175512 acaaaaaatccaatgagtaagatcc-tgtataaaataattacgtgcattgaaattatacctgggaagatgatccaccgtttggttcagcctgctttctca 41175610  T
Q  386 ccgacagaacatctcgtgccctcagcatctgaacaaaaatgtcctggtatcctttatactccttcc 451  Q
    | ||||||||||| | ||||||||||| ||||||||||| |||||||  ||||||||||| |||||    
T  41175611 cagacagaacatcccttgccctcagcaactgaacaaaaaagtcctggcctcctttatactgcttcc 41175676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 41147816 - 41147917
Alignment:
Q  4 atcttcaccaactgtaaagcataaagtttcagaaatttcagtagatattttttgcataaaacttaaataaaatttcttcatttagatcttgtcaactagt 103  Q
    |||||||||  |||||||||||| |||||||||||  | ||||||||||||   |||||  ||| ||||||||||| || ||||||||||||| ||||||    
T  41147816 atcttcaccttctgtaaagcatacagtttcagaaaaattagtagatattttccacataacgcttgaataaaatttcatcttttagatcttgtctactagt 41147915  T
Q  104 ag 105  Q
    ||    
T  41147916 ag 41147917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 41175399 - 41175491
Alignment:
Q  167 ttgtgattatatatttattatgaatgcataattaagtacattgtaatgctaatca-------taaatacaataaaaagataactggccattca 252  Q
    |||||| || |||||||||| | ||||| ||||||||||||||||||| ||||||       |||||||||||||||||||||| ||||||||    
T  41175399 ttgtgagtacatatttattaagtatgcagaattaagtacattgtaatggtaatcataaatattaaatacaataaaaagataactagccattca 41175491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 41148810 - 41148877
Alignment:
Q  114 aagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatattt 182  Q
    ||||||||| |||||||||| || || ||| ||||||||||||||||| | ||||| || |||||||||    
T  41148810 aagctgagattttggaattt-atgtaaattattttaggaaagaaaccgatggattgagaatatatattt 41148877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 251 - 448
Target Start/End: Complemental strand, 21014918 - 21014733
Alignment:
Q  251 catgtgaaaacattctggttgaggatatgaaacgcacaaaaaatccaatgtgtaaaattcatgtataaaatcattatgtgtagtgaaaatataccttgga 350  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||           ||| | ||||| |||||||| ||    
T  21014918 catgcgaaaacattctggttcaggatatgaaacgcacaaaaaatccaatgtgtaaaat-catgtat-----------gtgcattgaaattataccttcga 21014831  T
Q  351 tgatgatccacggtttggttctgcatgctttctgaccgacagaacatctcgtgccctcagcatctgaacaaaaatgtcctggtatcctttatactcct 448  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||| ||||| || ||||||| | |||| |||||||   |||||||||||||    
T  21014830 tgatgacccactgtctggttctgcatgctttctgaccgacagaacatctcttgcccacaacatctgatctaaaaagtcctggccacctttatactcct 21014733  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 21015034 - 21014924
Alignment:
Q  111 agcaagctgagagtttggaattttatatatattgttttaggaaagaaaccggtagattgtgattatatatttattatgaatgcataattaagtacattgt 210  Q
    |||||||||||| |||||||||| || | |||| ||||||||||||||| | ||||||| || ||||| |||||||   | ||| |||||||||||||||    
T  21015034 agcaagctgagattttggaattt-atgtgtattattttaggaaagaaactgatagattgcgaatatatctttattaaatacgcagaattaagtacattgt 21014936  T
Q  211 aatgctaatcat 222  Q
    |||| |||||||    
T  21014935 aatgttaatcat 21014924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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