View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_3 (Length: 796)

Name: NF2071_low_3
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_3
NF2071_low_3
[»] chr3 (2 HSPs)
chr3 (72-433)||(26073095-26073463)
chr3 (478-767)||(26073508-26073797)
[»] chr5 (2 HSPs)
chr5 (210-255)||(28735820-28735865)
chr5 (203-255)||(18542218-18542270)
[»] chr2 (1 HSPs)
chr2 (201-245)||(22556236-22556280)
[»] scaffold0001 (1 HSPs)
scaffold0001 (203-245)||(398637-398679)
[»] chr6 (2 HSPs)
chr6 (210-256)||(2468479-2468525)
chr6 (201-255)||(10666627-10666681)
[»] chr4 (3 HSPs)
chr4 (210-256)||(7422169-7422215)
chr4 (210-256)||(27131679-27131725)
chr4 (215-256)||(43397111-43397152)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 72 - 433
Target Start/End: Original strand, 26073095 - 26073463
Alignment:
Q  72 atggaaagagaatcggtttcaatgtgggagcttagttttgttgttccacctaatcacggtaatgctttctttgcttactttgttttccgtaattaagcac 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26073095 atggaaagagaatcggtttcaatgtgggagcttagttttgttgttccacctaatcacggtaatgctttctttgcttactttgttttccgtaattaagcag 26073194  T
Q  172 tgacacgaacattggacatgacaatatactagacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtttgacaagtgtcaggc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  26073195 tgacacgaacattggacatgacaatatactagacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatatgtttgataagtgtcagac 26073294  T
Q  272 accacagatatatctttgatcagaaatgtgt---------cttttactctacttttatgtttgtttctgtgtttccccagttgtttgtttaaaagtcaaa 362  Q
    |||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26073295 accacagatacatctttgatcagaaatgtgtcagttgctacttttactctacttttatgtttgttt-tgtgtttccccagttgtttgtttaaaagtcaaa 26073393  T
Q  363 aggtgtactttttaacaacttgtcagtttgatagagtagataaagttactcaaaaaacacatgtggaaaag 433  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  26073394 aggtgtactttttaacaacttgtcagtttgatagagttgat-aagttactcaaaaaacacatgtggaaaag 26073463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 478 - 767
Target Start/End: Original strand, 26073508 - 26073797
Alignment:
Q  478 cttctggtataagttagaatcagcatatgcagttcattctttttagtgaatgaagaataagcttaccttaatttagaacctagaagannnnnnnnggtct 577  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  26073508 cttctggtataacttagaatcagcatatgcagttcattcattttagtgaatgaagaataagcttaccttaatttagaacctagaagattttttttggtct 26073607  T
Q  578 tgaacctccggttcctggggaaaggggttttggtaacgtggagttcaactatgaggtagataagtaaagtttgaccaaagattagtctaatcagggtttg 677  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26073608 tgaacctccggttcctggggaaaggggttttggtaaggtggagttcaactatgaggtagataagtaaagtttgaccaaagattagtctaatcagggtttg 26073707  T
Q  678 agaacctagaagttaatcttatccaagttatcaatgtgaaccacttacaagctacaagttacttataagttagaagttaattaaaactgg 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26073708 agaacctagaagttaatcttatccaagttatcaatgtgaaccacttacaagctacaagttacttataagttagaagttaattaaaactgg 26073797  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 28735865 - 28735820
Alignment:
Q  210 gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgt 255  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||    
T  28735865 gtaataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 18542270 - 18542218
Alignment:
Q  203 gacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatgtgt 255  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||    
T  18542270 gacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgtgt 18542218  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 22556236 - 22556280
Alignment:
Q  201 tagacacaagtaataatttaagaaagtagaagtaattgaatgtaa 245  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||    
T  22556236 tagacacaggtaataatttaagaaaatagaagtgattgaatgtaa 22556280  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 398637 - 398679
Alignment:
Q  203 gacacaagtaataatttaagaaagtagaagtaattgaatgtaa 245  Q
    ||||||| ||||||||||||||| | |||||||||||||||||    
T  398637 gacacaaataataatttaagaaaattgaagtaattgaatgtaa 398679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 2468525 - 2468479
Alignment:
Q  210 gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtt 256  Q
    |||||||||||||||| | |||||||||||||||||  |||||||||    
T  2468525 gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgtt 2468479  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 10666681 - 10666627
Alignment:
Q  201 tagacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatgtgt 255  Q
    ||||||| | ||||||||| ||||| |||||||||||||||| |||| |||||||    
T  10666681 tagacactaataataatttgagaaaatagaagtaattgaatgaaatttcatgtgt 10666627  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 7422169 - 7422215
Alignment:
Q  210 gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtt 256  Q
    |||||||||| ||||| ||||||| |||||||||||||| |||||||    
T  7422169 gtaataatttgagaaaatagaagtgattgaatgtaattatatgtgtt 7422215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 27131725 - 27131679
Alignment:
Q  210 gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtt 256  Q
    |||||||||||||||| | |||||||||||||||||  |||||||||    
T  27131725 gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgtt 27131679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 43397111 - 43397152
Alignment:
Q  215 aatttaagaaagtagaagtaattgaatgtaattacatgtgtt 256  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  43397111 aatttaagaaaatagcagtaattgaatgtaatcacatgtgtt 43397152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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