View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_31 (Length: 439)
Name: NF2071_low_31
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 41128330 - 41127906
Alignment:
| Q |
1 |
tcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccggttaagctgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
41128330 |
tcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgcttt |
41128231 |
T |
|
| Q |
101 |
tatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtagagaataaattattatgacatattttcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
41128230 |
tatgcatatcatttagaagatcttttaatttcatacgtctaagatcttgacttccatcaagagtcttggtagaaaataaattattatgacatattttcct |
41128131 |
T |
|
| Q |
201 |
aagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgttatcaggaacagatctatcagtgaacaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
41128130 |
aagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattatgagttgttgtgttatcaggaacagatctatcagtgaacaat |
41128031 |
T |
|
| Q |
301 |
gaatcatttgtaaaaagaatttctttggccatatgtgatgatgagatgattatggtagtttctgtgcataatttaatacgcataataggaccatagaact |
400 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
41128030 |
gaatcatttgtaaaaagaatctctttggccatatgtgatgatgagatgattatggtagtttctgtgcatagcttaatgcgcataataggaccatataact |
41127931 |
T |
|
| Q |
401 |
tagcaagttttgcaagtgtttgttg |
425 |
Q |
| |
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|||||| || ||||||||||||||| |
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|
| T |
41127930 |
tagcaaattctgcaagtgtttgttg |
41127906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 41144351 - 41144775
Alignment:
| Q |
1 |
tcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccggttaagctgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
41144351 |
tcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgcttt |
41144450 |
T |
|
| Q |
101 |
tatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtagagaataaattattatgacatattttcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
41144451 |
tatgcatatcatttagaagatcttttaatttctttcgtctaagttcttgacttccatcaagagtcttggtagataataaattattatgacatattttcct |
41144550 |
T |
|
| Q |
201 |
aagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgttatcaggaacagatctatcagtgaacaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41144551 |
aagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattttgagttgttgtgttatcaggaacagatctatcagtgaacaat |
41144650 |
T |
|
| Q |
301 |
gaatcatttgtaaaaagaatttctttggccatatgtgatgatgagatgattatggtagtttctgtgcataatttaatacgcataataggaccatagaact |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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|
| T |
41144651 |
gaatcatttgtaaaaagaatctctttggccatatgtgatgatgagatgattatggtagtttctgtgcataacttaatgcgcataataggaccatataact |
41144750 |
T |
|
| Q |
401 |
tagcaagttttgcaagtgtttgttg |
425 |
Q |
| |
|
|||||| || ||||||||||||||| |
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|
| T |
41144751 |
tagcaaattctgcaagtgtttgttg |
41144775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 41119935 - 41120359
Alignment:
| Q |
1 |
tcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccggttaagctgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
41119935 |
tcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaatatcaacagcttcaccggttaagctgcttt |
41120034 |
T |
|
| Q |
101 |
tatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtagagaataaattattatgacatattttcct |
200 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||| ||| | |||||||||| ||||| |||||||| || |
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|
| T |
41120035 |
tatgcatatcattgagaaagtcttttaatttcatacgtctaagttcttgacttgcatcaagagtcttgttggagaataaatggttatggcatatttttct |
41120134 |
T |
|
| Q |
201 |
aagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgttatcaggaacagatctatcagtgaacaat |
300 |
Q |
| |
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||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41120135 |
aaggtgttgccagagaggtgaaaatgggaggaagactaagctaaaattgttgtgattatgagttgttgtgttatcaggaacagatctatcaatgaacaat |
41120234 |
T |
|
| Q |
301 |
gaatcatttgtaaaaagaatttctttggccatatgtgatgatgagatgattatggtagtttctgtgcataatttaatacgcataataggaccatagaact |
400 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| ||||||||||||| ||||| ||||||||| ||| |
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|
| T |
41120235 |
gaatcatgagtatgaagaatctctttggccatatctgatgaagagattattattgtagtttctgtccataatttaatactcataacaggaccataaaacc |
41120334 |
T |
|
| Q |
401 |
tagcaagttttgcaagtgtttgttg |
425 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
41120335 |
tagcaaattttgcaagtgtttgttg |
41120359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 75 - 422
Target Start/End: Complemental strand, 41034195 - 41033842
Alignment:
| Q |
75 |
aacagcttcaccggttaagctgcttttatgcatatc--atttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtag |
172 |
Q |
| |
|
|||||||| ||| ||||| || |||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| | ||| | | |
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|
| T |
41034195 |
aacagctttaccagttaaactacttttatgcatatctcattgagaagatctttcaatttcatacgtctaagttcttgacttgcatcaagattcttgtttg |
41034096 |
T |
|
| Q |
173 |
agaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgtt |
272 |
Q |
| |
|
|||||| || || ||| || |||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| | |
|
|
| T |
41034095 |
agaatagatgataatggcacgtttttctaaggtgttgcaaaagaggtgaaaatgggaggaaaactatgctaaaattgttgtgatcatgagttgttgtgat |
41033996 |
T |
|
| Q |
273 |
atcaggaacagatctatcagtgaacaatgaatcatttgtaaaaagaatttctttggccatatgtgatgatgagatgattatggtagtttctg----tgca |
368 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| ||| |||||| ||||| ||||||| |||||| ||||| ||||||||||| || | |||| |
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|
| T |
41033995 |
atcaggaacagatctgtcacagcacaatgaatcatgagtattaagaatctctttagccatatctgatgaagagatcattatggtagtctcggtgcatgca |
41033896 |
T |
|
| Q |
369 |
taatttaatacgcataataggaccatagaacttagcaagttttgcaagtgtttg |
422 |
Q |
| |
|
||| ||||||| |||||||||||||||||| ||||||| |||||| || ||||| |
|
|
| T |
41033895 |
taacttaatactcataataggaccatagaatttagcaaattttgctagggtttg |
41033842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 31130054 - 31129974
Alignment:
| Q |
21 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccggttaagctgctttt |
101 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
31130054 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgctttt |
31129974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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