View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_32 (Length: 436)
Name: NF2071_low_32
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2071_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 9346849 - 9347261
Alignment:
Q |
13 |
aatatataggattgttataaatgcaacaactgtgaggttaatgtt----ttgtttgctacagaaacttaacattctgttgttgtattttatggtttatta |
108 |
Q |
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T |
9346849 |
aatatataggattgttataaatgcaacagctgcgaggttaatgtttgttttgtttgctacagaaacttaacattctgttgttgtattttatggtttatta |
9346948 |
T |
|
Q |
109 |
aaaatctttggatcattgtcattctacaaatgtttgggggaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcct |
208 |
Q |
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T |
9346949 |
aaaatctttggaccattgtcattctacgaatgtttgggggaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcct |
9347048 |
T |
|
Q |
209 |
tttgagtttcaaatgttagaactcaataccttatttaattcaaaaccaatggaaaaatcaaatcaagacttgggtggtgtggatcgacattgattgttac |
308 |
Q |
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T |
9347049 |
tttgagtttcaaatgttagaactcaataccttatttaattcaaaaccaatggaaaaatcaaatcaagacttgggtggtgtggatcgacattgattgttac |
9347148 |
T |
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Q |
309 |
accttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttagaagtggagatacttatttagaaaacatatatgctacaaaagccatat |
408 |
Q |
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T |
9347149 |
accttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttagaagtgcagatacttatttagaaaacatatgtgctacaaaagccatat |
9347248 |
T |
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Q |
409 |
tcgatgcaacaac |
421 |
Q |
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T |
9347249 |
tcgatgcaacaac |
9347261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9356259 - 9356498
Alignment:
Q |
13 |
aatatataggattgttataaatgcaacaactgtgaggttaatgttttgtttgctacagaaacttaacattctgttgttgtattttatggtttattaaaaa |
112 |
Q |
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T |
9356259 |
aatatataggattgttataaatgcaacaactgtgaggttaatgttttgtttgctacagaaacttaacattctgttgttgtattttatggtttattaaaaa |
9356358 |
T |
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Q |
113 |
tctttggatcattgtcattctacaaatgtttgggg-gaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcctttt |
211 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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T |
9356359 |
tctttggatcattgtcattctacgaatgtttggggcgaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcttttt |
9356458 |
T |
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Q |
212 |
gagtttcaaatgttagaactcaataccttatttaattcaa |
251 |
Q |
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T |
9356459 |
gagtttcaaatgttagaactcaataccttatttaattcaa |
9356498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 295 - 421
Target Start/End: Original strand, 9356978 - 9357103
Alignment:
Q |
295 |
acattgattgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttagaagtggagatacttatttagaaaacatatatgc |
394 |
Q |
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T |
9356978 |
acattgattgttgcatcttatcatacagattatcccctcaaaa-taaaatgcatgaaacatatttagaagtggagatacttatttagaaaacatatatgc |
9357076 |
T |
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Q |
395 |
tacaaaagccatattcgatgcaacaac |
421 |
Q |
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T |
9357077 |
tacaaaagccatattcgatgcaacaac |
9357103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 9432457 - 9432523
Alignment:
Q |
295 |
acattgattgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttaga |
362 |
Q |
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T |
9432457 |
acattgattgttacatcttatcatacaaatcaccccctc-aaaacaaaatgcatgaaacatatttaga |
9432523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 9401964 - 9402030
Alignment:
Q |
295 |
acattgattgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttaga |
362 |
Q |
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T |
9401964 |
acattgattgttacatcttatcatacaaatcaccccctc-aaaacaaaatgtatgaaacatatttaga |
9402030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 9420209 - 9420269
Alignment:
Q |
301 |
attgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttaga |
362 |
Q |
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T |
9420209 |
attgttacatcttatcatacaaattacctcctc-aaaataaaatgcattaaatatatttaga |
9420269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 9432533 - 9432600
Alignment:
Q |
356 |
atttagaagtggagatacttatttagaaa--acatatatgctacaaaagccatattcgatgcaacaac |
421 |
Q |
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T |
9432533 |
atttagaagtgcagatacttatttacaaagaacatatttgctacaaaatccagatttgatgcaacaac |
9432600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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