View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_low_33 (Length: 431)
Name: NF2071_low_33
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_33 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 41813012 - 41812593
Alignment:
| Q |
12 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaacaacaccc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41813012 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagtagcacctaaacccaaacatgccaaccaacaacaccc |
41812913 |
T |
|
| Q |
112 |
accaatccacatacacaatggcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccatttaccataggtgtgactaatctagttcaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
41812912 |
accaatccacatacacaatggcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccatttcctttaggtgtgactaatctagttcaca |
41812813 |
T |
|
| Q |
212 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41812812 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
41812713 |
T |
|
| Q |
312 |
aaattagcccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaacgtaatccaccaacatta |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
|
|
| T |
41812712 |
aaattagtccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaaagtaatccaccaaaatca |
41812613 |
T |
|
| Q |
412 |
gttaggtgtcattatttagc |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41812612 |
gttaggtgtcattatttagc |
41812593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 7605391 - 7605810
Alignment:
| Q |
12 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaacaacaccc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7605391 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgtcaaccaacaacaccc |
7605490 |
T |
|
| Q |
112 |
accaatccacatacacaatggcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccatttaccataggtgtgactaatctagttcaca |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
7605491 |
accaatccacatacacaatagcctctcttaaaatattattctgtctaaaaaagaggtttgaatactccatttcctataggtgtgactaatctagttcaca |
7605590 |
T |
|
| Q |
212 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605591 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
7605690 |
T |
|
| Q |
312 |
aaattagcccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaacgtaatccaccaacatta |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
|
|
| T |
7605691 |
aaattagtccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaaagtaatccaccaaaatca |
7605790 |
T |
|
| Q |
412 |
gttaggtgtcattatttagc |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7605791 |
gttaggtgtcattatttagc |
7605810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 31768954 - 31769364
Alignment:
| Q |
12 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaacaacaccc |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31768954 |
atagggagatcttaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaacaacaccc |
31769053 |
T |
|
| Q |
112 |
accaatccacatacacaatggcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccatttaccataggtgtgactaatctagttcaca |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31769054 |
ac---------tacacaatggcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccatttcctataggtgtgactaatctagttcaca |
31769144 |
T |
|
| Q |
212 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31769145 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
31769244 |
T |
|
| Q |
312 |
aaattagcccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaacgtaatccaccaacatta |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
|
|
| T |
31769245 |
aaattagtccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaaagtaatccaccaaaatca |
31769344 |
T |
|
| Q |
412 |
gttaggtgtcattatttagc |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31769345 |
gttaggtgtcattatttagc |
31769364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 14186922 - 14186537
Alignment:
| Q |
12 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaacaacaccc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14186922 |
atagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccg----------------------acccaaacatgccaaccaacaacaccc |
14186845 |
T |
|
| Q |
112 |
accaatccacatacacaatggcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccatttaccataggtgtgactaatctagttcaca |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
14186844 |
accaatccacatacacaatagcctctcttaaaatattgttctgtctaaaaaagaggtttgaatactccattttctataggtgtga--------gttcaca |
14186753 |
T |
|
| Q |
212 |
gaccaaattgtggggcagtcctcacatgcatgtatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14186752 |
gaccaaattgtggggcagtcctcacatg----tatgacattgttattagatgcttccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaa |
14186657 |
T |
|
| Q |
312 |
aaattagcccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagctatagccaacgtaatccaccaacatta |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
14186656 |
aaattagtccactctccaaaaattgtgcaagtcatctttgaatcatggagaaacttcaatacacatttccagttatagccaaagtaatccaccaaaatta |
14186557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 20902164 - 20902323
Alignment:
| Q |
266 |
tccaaacttgatagacaatccttcaaagaaccttcgttgtttgcaaaaattagcccactctccaaaaattgtgcaagtcatctttgaatcatggagaaac |
365 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||| |||||||| |||||||||||| || |||||||||| |||||| |||||||||| ||||| |
|
|
| T |
20902164 |
tccaagcttgataggcaatccttcaaagagtcttcgtactttgcaaagattagcccactc--cagaaattgtgcagatcatctctgaatcatggcgaaac |
20902261 |
T |
|
| Q |
366 |
ttcaatacacatttccagctatagccaacgtaatccaccaacattagttaggtgtcattatt |
427 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |||||||||||| || ||||| || |||||||| |
|
|
| T |
20902262 |
ttaaatacacatttccagttatagccaaagtaatccaccaaaatcagttatgtctcattatt |
20902323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 20902088 - 20902135
Alignment:
| Q |
152 |
ctgtctaaaaaagaggtttgaatactccatttaccataggtgtgactaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||||||||||||| |
|
|
| T |
20902088 |
ctgtctaaaaaat-ggtttgaatactccatttcctataggtgtgactaa |
20902135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12059 times since January 2019
Visitors: 8179