View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_34 (Length: 430)
Name: NF2071_low_34
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_34 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 27559345 - 27559769
Alignment:
| Q |
6 |
aggagcagagaataagcaatcctttgttggtcttcctagaagtttagctcttaatgtagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcg |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559345 |
aggatcagaaaataagcaatcctttgttggtcttcctagaagtttagctcttaatgtagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcg |
27559444 |
T |
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| Q |
106 |
tggtttcccggctttgatggacaaaatttgaggctttcaataattaagcacttgaaaaaataaatgaattttaaaggaatagtggaaccaagccatgcac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559445 |
tggtttcccggctttgatggacaaaatttgaggctttcaataattaagcacttgaaaaaataaatgaattttaaaggaatagtggaaccaagccatgcac |
27559544 |
T |
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| Q |
206 |
atcatgataatcaacaagcggtacatgaaataataaggcaaaggaatgaagacaggaggtcagggagaaacagcagcttttaaacacgggcaaggcgnnn |
305 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559545 |
atcattataatcaacaagcggtacataaaataataaggcaaaggaatgaagacaggaggtcagggagaaacagcagcttttaaacacgggcaaggcgaaa |
27559644 |
T |
|
| Q |
306 |
nnnngagggaaataacaaacattctagagactggaactatgcattctgttaaagagcaagaatttgaatatcttgtagtaaagagaaagaggttttttat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27559645 |
aaaagagggaaataacaaacattctagagactggaactatgcattctgttaaagagcaaaaatttgaatatcttgtagtaaagagaaagaggttttttat |
27559744 |
T |
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| Q |
406 |
taacatccaacataaaatttggcaa |
430 |
Q |
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| T |
27559745 |
taacatccaacataaaatttggcaa |
27559769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 42351575 - 42351462
Alignment:
| Q |
6 |
aggagcagagaataagcaatcctttgttggtcttcctagaagtttagctcttaatgtagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcg |
105 |
Q |
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| T |
42351575 |
aggatcagaaaataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcg |
42351476 |
T |
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| Q |
106 |
tggtttcccggctt |
119 |
Q |
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|||| ||| ||||| |
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| T |
42351475 |
tggtgtccgggctt |
42351462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 36661901 - 36662033
Alignment:
| Q |
125 |
gacaaaatttgaggctttcaataattaagcacttgaaaaaataaatgaattttaaaggaatagtggaaccaagccatgcacatcatgataatcaacaagc |
224 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||| |||| |
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| T |
36661901 |
gacaaaatttgaggctttctataattaagttcttgaaaaaataaatgaattttaaaggaacagtggaaccaattcatgcacatcattaaaatcagcaagt |
36662000 |
T |
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| Q |
225 |
ggtacatgaaataataaggcaaaggaatgaaga |
257 |
Q |
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| T |
36662001 |
ggtacataaaataataaggcaaagcagtgaaga |
36662033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 29408771 - 29408866
Alignment:
| Q |
123 |
tggacaaaatttgaggctttcaataattaagcacttgaaaaaataaatgaattttaaaggaatagtggaaccaagccatgcacatcatgataatca |
218 |
Q |
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| T |
29408771 |
tggacataatttgaggctttctataattaagttcttgaaaaggtaaatgaattttaaaggaatagtggaaccaatccatgcacatcatgaaaatca |
29408866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 427
Target Start/End: Original strand, 29408930 - 29409118
Alignment:
| Q |
252 |
tgaagacaggaggtcagggagaaacagcagcttttaaacacgggcaaggcgnnnnnnngagggaaataacaaacattctagagactggaacta------- |
344 |
Q |
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| T |
29408930 |
tgaatacaggaggtcagggacaatcagcggattttaaacatgggcaaggggaaaaaatgagggaaataactagcattctagagactggaactagtatgac |
29409029 |
T |
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| Q |
345 |
------tgcattctgttaaagagcaagaatttgaatatcttgtagtaaagagaaagaggttttttattaacatccaacataaaatttgg |
427 |
Q |
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| T |
29409030 |
attatctgcattctgttaaaaagcaaaaacttgaatctcttgtaacaaagagaaagaggtttttagttaacatctaacataaaatttgg |
29409118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 427
Target Start/End: Complemental strand, 24203719 - 24203637
Alignment:
| Q |
345 |
tgcattctgttaaagagcaa-gaatttgaatatcttgtagtaaagagaaagaggttttttattaacatccaacataaaatttgg |
427 |
Q |
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||||||||||||| ||||| |||||| || ||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
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| T |
24203719 |
tgcattctgttaataagcaaagaattt-aacatcttgtagcaatgagaaagaggttttttattaacatctaacataaaatttgg |
24203637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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