View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_36 (Length: 429)

Name: NF2071_low_36
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_36
NF2071_low_36
[»] chr4 (8 HSPs)
chr4 (22-416)||(35269907-35270300)
chr4 (236-298)||(35274818-35274880)
chr4 (218-286)||(35252754-35252822)
chr4 (215-283)||(35277094-35277162)
chr4 (218-286)||(35240502-35240570)
chr4 (365-409)||(35252622-35252666)
chr4 (217-283)||(35282681-35282747)
chr4 (365-409)||(35240370-35240414)
[»] chr8 (2 HSPs)
chr8 (219-285)||(27410580-27410646)
chr8 (219-285)||(37963949-37964015)
[»] chr3 (2 HSPs)
chr3 (219-285)||(27320075-27320141)
chr3 (219-285)||(27361806-27361872)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 35270300 - 35269907
Alignment:
Q  22 ttgctaaattagaccatataaaattgggctccctaaattgaaatagaataagaatcgagtttgtaacnnnnnnnnnngaggataaaaataaagatttcca 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  35270300 ttgctaaattagaccatataaatttgggctccctaaattgaaatagaataagaatcgagtttgtaacaaaaaaaaa-gaggataaaaataaagatttcca 35270202  T
Q  122 actggttcctctgaaagtaataaatacttttatgtttcaagtatttcagcttaaagtttttgggtttgattgtcatgcagcaagtnnnnnnncttattgc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  35270201 actggttcctctgaaagtaataaatacttttatgtttcaagtatttcagcttaaagtttttgggtttgattgtcatgcagcaagtaaaaaaacttattgc 35270102  T
Q  222 ataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgagaatggccaaacacatagcagtacacatgcttctgat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35270101 ataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgagaatggccaaacacatagcagtacacatgcttctgat 35270002  T
Q  322 ttatcaattactggactagcagtggctcaaaatgaaaccatcacatcagctagcgatgattctgtggtgaagatatggagatgaagttattgtct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35270001 ttatcaattactggactagcagtggctcaaaatgaaaccatcacatcagctagcgatgattctgtggtgaagatatggagatgaagttattgtct 35269907  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 35274880 - 35274818
Alignment:
Q  236 aataatatgtgtacaatttattacagtgcctggaattgttgattcttgagaatggccaaacac 298  Q
    |||| ||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  35274880 aatactatgtgtacaatttattgcagtgcttggaaatgttgattcttgagattggccaaacac 35274818  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 35252822 - 35252754
Alignment:
Q  218 ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga 286  Q
    ||||||||| || ||||||||||| |||| |||| ||||| |||||| |||||||||||||||||||||    
T  35252822 ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgaga 35252754  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 35277162 - 35277094
Alignment:
Q  215 ttattgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttg 283  Q
    |||||||||| |  ||||||||||||| ||||||||||||||| ||| || |||||||||||| |||||    
T  35277162 ttattgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgactcttg 35277094  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 35240570 - 35240502
Alignment:
Q  218 ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga 286  Q
    ||||||||| || ||||||||||| |||| |||| ||||| |||||| |||||||||||| | ||||||    
T  35240570 ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgactgttgaga 35240502  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 35252666 - 35252622
Alignment:
Q  365 catcagctagcgatgattctgtggtgaagatatggagatgaagtt 409  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  35252666 catcagctagcagtgattctgtggtgaagatatggaaatgaagtt 35252622  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 35282747 - 35282681
Alignment:
Q  217 attgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttg 283  Q
    ||||||||||  ||||| || |||| ||||||||||||||| |||||| ||||||||| || |||||    
T  35282747 attgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggactcttg 35282681  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 35240414 - 35240370
Alignment:
Q  365 catcagctagcgatgattctgtggtgaagatatggagatgaagtt 409  Q
    |||||||||||  | ||||||||||||||||||||| ||||||||    
T  35240414 catcagctagcagtaattctgtggtgaagatatggaaatgaagtt 35240370  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 27410646 - 27410580
Alignment:
Q  219 tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag 285  Q
    |||||||| |||||||||||||| |||||  | |||||| |||||| || |||| ||||||||||||    
T  27410646 tgcataaatagaaagtaaataatttgtgtcaagtttattgcagtgcatgaaatttttgattcttgag 27410580  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 37963949 - 37964015
Alignment:
Q  219 tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag 285  Q
    |||||||| |||||||||||||| |||||  | |||||| |||||| ||||||| || |||||||||    
T  37963949 tgcataaatagaaagtaaataatttgtgtctagtttattgcagtgcatggaattttttattcttgag 37964015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 27320075 - 27320141
Alignment:
Q  219 tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag 285  Q
    |||||||| |||||||||||||| |||||  | |||||| |||||| ||||||| || |||||||||    
T  27320075 tgcataaatagaaagtaaataatttgtgtctagtttattgcagtgcatggaattttttattcttgag 27320141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 27361806 - 27361872
Alignment:
Q  219 tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag 285  Q
    |||||||| |||||||||||||| |||||  | |||||| |||||| ||||||| || |||||||||    
T  27361806 tgcataaatagaaagtaaataatttgtgtctagtttattgcagtgcatggaattttttattcttgag 27361872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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