View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_37 (Length: 428)
Name: NF2071_low_37
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 33772830 - 33772419
Alignment:
| Q |
1 |
aagaatcaagaaacatagtcttgcataagagagccttattcaagagagaaagagtgaacattgtattttttgcttctttatcatcatggttgagtcagag |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33772830 |
aagaatcaagaaacatagtcttgcacaagagaaccttattcaaaagagaaagagtgaacattgtattttctgcttctttatcatcatggttgagtcagag |
33772731 |
T |
|
| Q |
101 |
gaaaataaaagctccacttccacatatgacagggtagctgaagtgaaagcctttgaagaatcaaaagttggtgtgaaaggtctcttggaatctggaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33772730 |
gaaaataaaagctccacttccacatatgacagggtagctgaagtgaaagcctttgaagaatcaaaagttggtgtgaaaggtctcttggaatctggaatat |
33772631 |
T |
|
| Q |
201 |
gtgtgacaaagatcccacgtatgttccattatcccaatttgaatttgaacatgaactccactcatgaaagtgacccatcttccaagttcaatgtccccat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33772630 |
gtgtgacaaagatcccacgtatgttccattatcccaatttgaacttgaacatgaactccactcatgaaagtgacccatcttccaagttcaatgtccccat |
33772531 |
T |
|
| Q |
301 |
catagaccttcaaaatatacacacaaacccatgtttgcatgctgaggtacttgacaagattcgaagtgcttgtcgtgaatggggatgttttcaagtgatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33772530 |
catagaccttcaaaatatacacacaaacccatgtttgcatgctgaggtacttgacaagattcgaagtgcttgtcgtgaatggggatgttttcaagtgatt |
33772431 |
T |
|
| Q |
401 |
aatcatggtatt |
412 |
Q |
| |
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|||||||||||| |
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| T |
33772430 |
aatcatggtatt |
33772419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 117 - 412
Target Start/End: Complemental strand, 33769426 - 33769137
Alignment:
| Q |
117 |
cttccacatatgacagggtagctgaagtgaaagcctttgaagaatcaaaagttggtgtgaaaggtctcttggaatctggaatatgtgtgacaaagatccc |
216 |
Q |
| |
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||||||||||||| || ||| ||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
33769426 |
cttccacatatgatagaacagcagaagtgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatctggaatatggacgacaaagatccc |
33769327 |
T |
|
| Q |
217 |
acgtatgttccattatcccaatttgaatttgaacatgaactccactcatgaaagtgacccatcttccaagttcaatgtccccatcatagaccttcaaaat |
316 |
Q |
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||||||||| |||| |||||||||||| |||||| || |||||||||||| ||||||||||||||| |||||| ||||||||||||||| || |
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| T |
33769326 |
acgtatgtttcattctcccaatttgaacttgaac------tctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaagat |
33769233 |
T |
|
| Q |
317 |
atacacacaaacccatgtttgcatgctgaggtacttgacaagattcgaagtgcttgtcgtgaatggggatgttttcaagtgattaatcatggtatt |
412 |
Q |
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||| |||| | |||||||| ||||||||||||||||| |||||||||||||| || || ||||||| ||||||||||||||||||||||||| |
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| T |
33769232 |
ataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtatt |
33769137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 33764584 - 33764468
Alignment:
| Q |
114 |
ccacttccacatatgacagggtagctgaagtgaaagcctttgaagaatcaaaagttggtgtgaaaggtctcttggaatctggaatatgtgtgacaaagat |
213 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| ||||| |||||||||| |||||| ||||| ||| | |||||||||| ||| ||||||||||| |
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| T |
33764584 |
ccacttccacatataacagaatagctgaagtgaaagcttttgacgaatcaaaagctggtgtaaaaggcctcgtagaatctggaacatgcgtgacaaagat |
33764485 |
T |
|
| Q |
214 |
cccacgtatgttccatt |
230 |
Q |
| |
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||||||||||||||||| |
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| T |
33764484 |
cccacgtatgttccatt |
33764468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 412
Target Start/End: Complemental strand, 33764418 - 33764277
Alignment:
| Q |
271 |
tgacccatcttccaagttcaatgtccccatcatagaccttcaaaatatacacacaaacccatgtttgcatgctgaggtacttgacaagattcgaagtgct |
370 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||| ||||||||| |||| |||| || ||||||||||||| ||||||| ||||||| ||||| ||||| |
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| T |
33764418 |
tgactcatcttcaaagttgtgtgtccccatcattgaccttcaagatatgaacactaatccatgtttgcatgttgaggtagttgacaaaattcgtagtgca |
33764319 |
T |
|
| Q |
371 |
tgtcgtgaatggggatgttttcaagtgattaatcatggtatt |
412 |
Q |
| |
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|| || ||||||| ||| ||||||||||||||||||||| |
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| T |
33764318 |
tgcaaggagtggggatttttccaagtgattaatcatggtatt |
33764277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 26395846 - 26395890
Alignment:
| Q |
139 |
tgaagtgaaagcctttgaagaatcaaaagttggtgtgaaaggtct |
183 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| | |||||| |
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| T |
26395846 |
tgaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtct |
26395890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 19844590 - 19844653
Alignment:
| Q |
344 |
gaggtacttgacaagattcgaagtgcttgtcgtgaatggggatgttttcaagtgattaatcatg |
407 |
Q |
| |
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|||||| ||| ||| ||||||||||| |||| ||| ||||||| |||||| ||||||||||||| |
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| T |
19844590 |
gaggtaattggcaaaattcgaagtgcatgtcatgagtggggattttttcaggtgattaatcatg |
19844653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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