View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_39 (Length: 407)

Name: NF2071_low_39
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_39
NF2071_low_39
[»] chr7 (9 HSPs)
chr7 (16-393)||(3818467-3818842)
chr7 (168-312)||(33355162-33355308)
chr7 (120-218)||(3808177-3808275)
chr7 (167-225)||(33355288-33355346)
chr7 (127-215)||(30739659-30739746)
chr7 (20-94)||(33422592-33422665)
chr7 (200-269)||(25572845-25572914)
chr7 (178-307)||(1402927-1403061)
chr7 (332-365)||(20184258-20184291)
[»] chr3 (4 HSPs)
chr3 (181-311)||(54126525-54126657)
chr3 (169-225)||(54126638-54126694)
chr3 (332-365)||(39850463-39850496)
chr3 (332-365)||(43639200-43639233)
[»] chr4 (14 HSPs)
chr4 (138-220)||(38341045-38341128)
chr4 (19-94)||(44589484-44589559)
chr4 (21-92)||(9626542-9626615)
chr4 (138-220)||(9641097-9641179)
chr4 (20-94)||(43982081-43982154)
chr4 (20-97)||(9641229-9641308)
chr4 (159-232)||(46543977-46544050)
chr4 (230-326)||(3017171-3017267)
chr4 (138-217)||(9626408-9626487)
chr4 (18-73)||(36309836-36309891)
chr4 (166-225)||(38340908-38340967)
chr4 (335-374)||(43982462-43982501)
chr4 (127-287)||(42907059-42907221)
chr4 (143-259)||(45607983-45608103)
[»] chr8 (6 HSPs)
chr8 (134-326)||(26676666-26676865)
chr8 (35-89)||(16932989-16933043)
chr8 (248-309)||(29869902-29869963)
chr8 (332-365)||(8210343-8210376)
chr8 (127-183)||(27342467-27342524)
chr8 (41-94)||(27342953-27343008)
[»] chr1 (7 HSPs)
chr1 (20-97)||(4088191-4088268)
chr1 (146-287)||(19089380-19089521)
chr1 (18-83)||(19214182-19214247)
chr1 (230-311)||(19214342-19214423)
chr1 (173-225)||(30823180-30823232)
chr1 (127-220)||(34188625-34188716)
chr1 (357-398)||(19089644-19089685)
[»] chr2 (12 HSPs)
chr2 (127-220)||(15940483-15940575)
chr2 (26-94)||(11085351-11085419)
chr2 (41-97)||(18034185-18034241)
chr2 (127-191)||(18034286-18034350)
chr2 (252-312)||(22825702-22825762)
chr2 (152-284)||(40442506-40442641)
chr2 (152-284)||(40503663-40503798)
chr2 (332-365)||(2818686-2818719)
chr2 (332-365)||(7737183-7737216)
chr2 (332-365)||(20893003-20893036)
chr2 (167-215)||(9933694-9933742)
chr2 (173-225)||(18034461-18034513)
[»] chr5 (2 HSPs)
chr5 (153-222)||(25794935-25795005)
chr5 (159-215)||(20476556-20476612)
[»] chr6 (1 HSPs)
chr6 (332-365)||(14393581-14393614)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 3818842 - 3818467
Alignment:
Q  16 tggtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatcttgnnnnnnnnnnnnnnnnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  3818842 tggtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatcttgtttttttttctttttct 3818743  T
Q  116 nnnnaacaacttaattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttctt 215  Q
        ||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||    
T  3818742 ttt-aacaacttaattgataatatttgtcattaaaaaaaa-cttttattttaaggataaaattgatgtgcattttcttacgtgcttttagtgtggttctt 3818645  T
Q  216 cacatgaaattaactttgtggttatagaaaaatttgagaaaattatggatttgataaatcatggatagttataagtatttcatgtaaagaaccacatcaa 315  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  3818644 cacatgaaattaactttgtggttatagaaaaaattgagaaaattatggatttgagaaatcatggatagttataaacatttcatgtaaagaaccacatcaa 3818545  T
Q  316 atgcatataagttctgtccttaggtgcttttcgtatgattcctaactaaactactcatgtttttcatgaatccaccat 393  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3818544 atgcatataagttttgcccttaggtgcttttcgtatgattcctaactaaactactcatgtttttcatgaatccaccat 3818467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 33355162 - 33355308
Alignment:
Q  168 aggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaattaactt--tgtggttatagaaaaatttgagaaaattatggat 265  Q
    ||||||||| |||||||||||| |||| || ||||| || ||||||||||||| ||||| ||||  |||| |||||  ||| ||||||||| || |||||    
T  33355162 aggacaaaacttaggtgcatttccttatgtactttttgtatggttcttcacataaaattcacttgttgtgcttataacaaactttgagaaatttgtggat 33355261  T
Q  266 ttgataaatcatggatagttataagtatttcatgtaaagaaccacat 312  Q
    |||| ||||||| | ||||||| ||||||| |||| |||||||||||    
T  33355262 ttgagaaatcattggtagttatgagtatttgatgtgaagaaccacat 33355308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 3808275 - 3808177
Alignment:
Q  120 aacaacttaattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcac 218  Q
    |||||||||||||  |||||||||||||||| ||||   | |||||| ||||||||| || |||||||||||||| ||| || |||| || ||||||||    
T  3808275 aacaacttaattgccaacatttgtcattaaaaaaaaatatatatttttaggacaaaactttggtgcattttcttatgtgtttctcgtatgcttcttcac 3808177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 33355346 - 33355288
Alignment:
Q  167 aaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaat 225  Q
    |||||||||| |||||||||||| |||| ||||||||| ||||||||||||||| ||||    
T  33355346 aaggacaaaacttaggtgcatttccttaggtgcttttcatgtggttcttcacatcaaat 33355288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 30739746 - 30739659
Alignment:
Q  127 taattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttctt 215  Q
    |||||| | |||||||||||| || |||||| |||||||||||||||| | ||||||| |||||||||| | |||||||| | ||||||    
T  30739746 taattgctgacatttgtcatttaa-aaaatcatttattttaaggacaagacttaggtgtattttcttacatacttttcgtatagttctt 30739659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 33422665 - 33422592
Alignment:
Q  20 catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    |||||||| ||||||||||||||||||||||| ||   ||||||||||||| || || ||||||| |||||||||    
T  33422665 catccctatttactgctactattactattatttttccccttcataagtctactatta-tattatattcatttgat 33422592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 25572845 - 25572914
Alignment:
Q  200 ttttcgtgtggttcttcacatgaaattaactttgtggttatagaaaaatttgagaaaattatggatttga 269  Q
    ||||||||| ||||||||| | ||||  ||||||||||||||  ||| |||||||||||||||| |||||    
T  25572845 ttttcgtgttgttcttcacttaaaatacactttgtggttataacaaactttgagaaaattatggttttga 25572914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 307
Target Start/End: Original strand, 1402927 - 1403061
Alignment:
Q  178 ttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaattaacttt---gtggttatagaaaaatttgagaaaattatggatttga-taaa 273  Q
    |||||||  ||| |||| || |||||||||| ||||||||| | ||||| |||||   |||||||||  ||| |||||||||||||| |||||||  |||    
T  1402927 ttaggtgtgtttccttaggtacttttcgtgttgttcttcacttaaaatttacttttttgtggttataacaaattttgagaaaattatagatttgaggaaa 1403026  T
Q  274 tcatggat-agttataagtatttcatgtaaagaac 307  Q
    |||||| | |||||||| ||||||| || ||||||    
T  1403027 tcatgggtaagttataaatatttcaagtgaagaac 1403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 20184258 - 20184291
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  20184258 tccttaggtgcttttcgtatgattcttaactaaa 20184291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 54126525 - 54126657
Alignment:
Q  181 ggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaatt-aactt-tgtggttatagaaaaatttgagaaaattatggatttgataaatcatg 278  Q
    ||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| |||| | |||  ||| ||| |||||||| ||||||||| |||||||     
T  54126525 ggtgcatttccttaggtgcttttcatgtggttcttcacataaaattgaacttctgtgctaataacaaactttaagaaaattgtggatttgagaaatcatt 54126624  T
Q  279 gatagttataagtatttcatgtaaagaaccaca 311  Q
    | ||||||| ||||||| |||| ||||||||||    
T  54126625 ggtagttattagtattttatgtgaagaaccaca 54126657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 54126694 - 54126638
Alignment:
Q  169 ggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaat 225  Q
    |||||||| |||||||||||| |||| ||| ||||||||||||||||||||| ||||    
T  54126694 ggacaaaacttaggtgcatttccttaggtgtttttcgtgtggttcttcacataaaat 54126638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 39850496 - 39850463
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  39850496 tccttaggtgcttttcgtatgattcttaactaaa 39850463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 43639233 - 43639200
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  43639233 tccttaggtgcttttcgtatgattcttaactaaa 43639200  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 38341128 - 38341045
Alignment:
Q  138 atttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcattttc-ttacgtgcttttcgtgtggttcttcacat 220  Q
    ||||||||||||| |||||| ||| ||||||||| ||||||||||||||||||| |||| |||||||||| |||||||| ||||    
T  38341128 atttgtcattaaaaaaaatcatttgttttaaggataaaatttaggtgcattttctttacatgcttttcgtatggttctttacat 38341045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 44589559 - 44589484
Alignment:
Q  19 tcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    ||||||||||||||||||| | |||||||| ||||||| ||||||||||||| || |||||||||| |||| ||||    
T  44589559 tcatccctaattactgctattgttactattcttgttttccttcataagtctaatattactattatattcatctgat 44589484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 9626615 - 9626542
Alignment:
Q  21 atccctaattactgctactattactattattgttttt--cttcataagtctattagtactattataatcatttg 92  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||||||||||||| || ||||||| |||||||    
T  9626615 atccctaattactgccactattactattattttttttcccttcataagtctattattaatattatattcatttg 9626542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 9641179 - 9641097
Alignment:
Q  138 atttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatttt-cttacgtgcttttcgtgtggttcttcacat 220  Q
    ||||||||||||| ||| || ||||||||||||||||||||| | |||||||| ||||| || ||||| |||||||||||||||    
T  9641179 atttgtcattaaa-aaattcctttattttaaggacaaaattttgttgcattttccttacatgtttttcttgtggttcttcacat 9641097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 43982081 - 43982154
Alignment:
Q  20 catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    |||| ||||||| |||| || ||||||||||| |||| |||||||||||||||| |||||||||| |||||||||    
T  43982081 catctctaattagtgctgctgttactattatt-ttttccttcataagtctattattactattatattcatttgat 43982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 9641308 - 9641229
Alignment:
Q  20 catccctaattactgctactattactattattgttttt--cttcataagtctattagtactattataatcatttgatctt 97  Q
    |||||||||||| ||||| ||||||||||||| |||||  |||||||||||||| | || ||||||| ||||||| ||||    
T  9641308 catccctaattaatgctattattactattattttttttcccttcataagtctataattaatattatattcatttgttctt 9641229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 46544050 - 46543977
Alignment:
Q  159 tttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaattaacttt 232  Q
    |||||||||| || |||||||||||| |||||||||| || ||| ||| || |||||||||| ||||| |||||    
T  46544050 tttattttaaagataaaatttaggtgtattttcttacatgttttccgtatgattcttcacataaaatttacttt 46543977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 3017171 - 3017267
Alignment:
Q  230 tttgtggttatagaaaaatttgagaaaattatggatttgataaatcatggatagttataagtatttcatgtaaagaaccacatcaaatgcatataag 326  Q
    ||||||||| ||  ||| ||| |||||||| ||||||||| |||| || | ||||||||||| ||| |||| ||||||||||| ||| |||| ||||    
T  3017171 tttgtggttgtaacaaactttaagaaaattgtggatttgagaaataataggtagttataagtgttttatgtcaagaaccacatgaaaagcatttaag 3017267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 9626487 - 9626408
Alignment:
Q  138 atttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatttt-cttacgtgcttttcgtgtggttcttca 217  Q
    ||||||||||||| ||  ||||| |||||||||||||||||| | |||||||| ||||| || ||||| ||||||||||||    
T  9626487 atttgtcattaaaaaatttcttt-attttaaggacaaaattttgttgcattttccttacatgtttttcttgtggttcttca 9626408  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 36309836 - 36309891
Alignment:
Q  18 gtcatccctaattactgctactattactattattgtttttcttcataagtctatta 73  Q
    |||||| ||||||| | ||||||||||||||||  |||| ||||||||||||||||    
T  36309836 gtcatctctaattatttctactattactattatctttttccttcataagtctatta 36309891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 38340908 - 38340967
Alignment:
Q  166 taaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaat 225  Q
    |||||| |||||||||||| |||||||||  |||| |||||||||| |||||||| ||||    
T  38340908 taaggataaaatttaggtgtattttcttaaatgctattcgtgtggtacttcacataaaat 38340967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 43982462 - 43982501
Alignment:
Q  335 ttaggtgcttttcgtatgattcctaactaaactactcatg 374  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  43982462 ttaggtgcttttcatatgattcctaattaaactactcatg 43982501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 42907221 - 42907059
Alignment:
Q  127 taattgataacatttgtcattaaacaaaa-tcttttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaat 225  Q
    |||||| ||| ||||||||||||| |||| || ||||||| ||| ||| ||  |||||| ||||  |||| |   ||| || ||||||| ||||| ||||    
T  42907221 taattgttaaaatttgtcattaaagaaaaatcatttatttaaagaacacaaagtaggtgtatttctttacatatgttttgtatggttctccacataaaat 42907122  T
Q  226 taac-tttgtggttatagaaaaatttgagaaaattatggatttgataaatcatggatagttat 287  Q
    | || ||||| ||||||  ||||||||| |||||||||||| ||| ||||||| | |||||||    
T  42907121 ttacctttgtagttataacaaaatttgaaaaaattatggatatgaaaaatcataggtagttat 42907059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 45608103 - 45607983
Alignment:
Q  143 tcattaaacaaaatcttttattttaaggac---aaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaattaac--tttgtggt 237  Q
    |||||||| |||||||||||||||||||||   ||||| ||||||  ||| ||||| | |||||||| |||||||||| ||  |||||||  ||| ||||    
T  45608103 tcattaaa-aaaatcttttattttaaggacaaaaaaatgtaggtgtgtttccttacatacttttcgtatggttcttcatatagaattaaccttttatggt 45608005  T
Q  238 tatagaaaaatttgagaaaatt 259  Q
    ||||  ||| ||||| ||||||    
T  45608004 tataacaaactttgataaaatt 45607983  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 326
Target Start/End: Original strand, 26676666 - 26676865
Alignment:
Q  134 taacatttgtcattaaacaaaatct-tttattttaaggacaaaatttaggtgcattttcttacgtgcttttc-gtgtggttcttcacatgaaattaactt 231  Q
    ||||||||||||||||  ||||  | ||||||||||||  ||||| |||||| |||| ||||| || ||||  || ||||||||||||| ||||||| ||    
T  26676666 taacatttgtcattaaggaaaaattgtttattttaaggctaaaatgtaggtgtatttccttacatgtttttttgtatggttcttcacattaaattaattt 26676765  T
Q  232 tgtg--gttatagaaaaatttgagaaaattatggatttgataaatcatg---gatagttataagtatttcatgtaaagaaccacatcaaatgcatataag 326  Q
    | ||  ||||||  ||| ||||| ||||||||||||||||||||||||    | ||||||  ||||||| |||| ||||||||||| ||| |||| ||||    
T  26676766 tttgaggttataacaaactttgacaaaattatggatttgataaatcatcataggtagttaagagtattttatgtgaagaaccacatgaaaagcatttaag 26676865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 16933043 - 16932989
Alignment:
Q  35 ctactattactattattgtttttcttcataagtctattagtactattataatcat 89  Q
    ||||||||||||||||| |||| |||||||||||||||| |||| ||||| ||||    
T  16933043 ctactattactattatttttttccttcataagtctattattactgttatattcat 16932989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 29869963 - 29869902
Alignment:
Q  248 tttgagaaaattatggatttgataaatcatggatagttataagtatttcatgtaaagaacca 309  Q
    |||||||||||| ||||||||| ||||||| | ||||||| ||||||| |||| ||||||||    
T  29869963 tttgagaaaattgtggatttgagaaatcattggtagttatgagtattttatgtcaagaacca 29869902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 8210343 - 8210376
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  8210343 tccttaggtgcttttcgtatgattcttaactaaa 8210376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27342524 - 27342467
Alignment:
Q  127 taattgataacatttgtcattaaacaa-aatcttttattttaaggacaaaatttaggt 183  Q
    |||||| ||||||||||||||||| || |||| ||||||||||||| ||||| |||||    
T  27342524 taattgctaacatttgtcattaaagaagaatcatttattttaaggataaaatgtaggt 27342467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 27343008 - 27342953
Alignment:
Q  41 ttactattattgtttttcttcataagtctattagtac--tattataatcatttgat 94  Q
    |||||||||||||||||||||||||||| | || |||  ||||||| |||||||||    
T  27343008 ttactattattgtttttcttcataagtcgactattactatattatactcatttgat 27342953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 4088268 - 4088191
Alignment:
Q  20 catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatctt 97  Q
    ||||||||||||||  |||||||||||||||| ||| |||||||||||||| |  |||||||||| | ||||||||||    
T  4088268 catccctaattactcttactattactattattttttctcttcataagtctactgttactattatatttatttgatctt 4088191  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 19089380 - 19089521
Alignment:
Q  146 ttaaacaaaatcttttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaatt-aactttgtggttatagaa 244  Q
    ||||| |||| | |||||||| ||||||||  |||||| ||||| ||||| || ||| | | ||||||||||||| ||||| |  |||||||||||| ||    
T  19089380 ttaaaaaaaaacctttatttttaggacaaaccttaggtccatttccttacatgttttccatatggttcttcacataaaattcatttttgtggttata-aa 19089478  T
Q  245 aaatttgagaaaattatggatttgataaatcatggatagttat 287  Q
    || |||||||||||| || |||||| |||| || | |||||||    
T  19089479 aagtttgagaaaattgtgaatttgagaaattataggtagttat 19089521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19214182 - 19214247
Alignment:
Q  18 gtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattat 83  Q
    |||||||||||||| || |||| |||||||||||||||| ||||||  |||||||| || ||||||    
T  19214182 gtcatccctaattattgttacttttactattattgttttacttcatttgtctattattattattat 19214247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 19214342 - 19214423
Alignment:
Q  230 tttgtggttatagaaaaatttgagaaaattatggatttgataaatcatggatagttataagtatttcatgtaaagaaccaca 311  Q
    |||||||||||| |||| ||| |||||||| || |||||| |||| || | ||||||||||||||| || | ||||||||||    
T  19214342 tttgtggttataaaaaagtttaagaaaattgtgaatttgagaaataataggtagttataagtattttatatgaagaaccaca 19214423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 30823232 - 30823180
Alignment:
Q  173 aaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaat 225  Q
    |||| |||||||||||||||||  ||||||||||||||| |||||||| ||||    
T  30823232 aaaacttaggtgcattttcttaaatgcttttcgtgtggtacttcacataaaat 30823180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 34188625 - 34188716
Alignment:
Q  127 taattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacat 220  Q
    |||||| ||| |||||||| |||| |||  |||||||||| | |||||||||||||||||||| ||||| || |||| || || || |||||||    
T  34188625 taattgctaaaatttgtcactaaaaaaa--cttttatttttaagacaaaatttaggtgcatttccttacatgtttttggtatgatttttcacat 34188716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 19089644 - 19089685
Alignment:
Q  357 ctaactaaactactcatgtttttcatgaatccaccatattct 398  Q
    |||||||||||||||||| ||||||| ||||||| |||||||    
T  19089644 ctaactaaactactcatgattttcataaatccacaatattct 19089685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 15940483 - 15940575
Alignment:
Q  127 taattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatttt-cttacgtgcttttcgtgtggttcttcacat 220  Q
    |||||| ||| |||||||||||||  ||||| ||||||||||| ||| || || |||||||||| ||||| ||||||| || |||||||||||||    
T  15940483 taattgctaatatttgtcattaaa--aaatcctttattttaagaacacaactttggtgcattttccttacatgctttttgtatggttcttcacat 15940575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 11085351 - 11085419
Alignment:
Q  26 taattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    |||||| || ||||| |||||||||||||| ||||| ||| | ||||| |||||||||| |||||||||    
T  11085351 taattaatgttactactactattattgtttatcttcgtaaatatattattactattatattcatttgat 11085419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 18034185 - 18034241
Alignment:
Q  41 ttactattattgtttttcttcataagtctattagtactattataatcatttgatctt 97  Q
    ||||||||||| ||| ||||| ||||| ||||| |||||||||| ||||||||||||    
T  18034185 ttactattattttttctcttcttaagtttattattactattatattcatttgatctt 18034241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 18034286 - 18034350
Alignment:
Q  127 taattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcattttc 191  Q
    |||||| ||| || ||| |||||| |||||| ||||||||||||| |||| ||||||||||||||    
T  18034286 taattgttaatatgtgttattaaaaaaaatcctttattttaaggagaaaacttaggtgcattttc 18034350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 22825702 - 22825762
Alignment:
Q  252 agaaaattatggatttgataaatcatggatagttataagtatttcatgtaaagaaccacat 312  Q
    |||||||||||||||| | ||||||| ||||||||| ||||||| |||| ||||| |||||    
T  22825702 agaaaattatggatttaaaaaatcattgatagttatgagtattttatgtgaagaatcacat 22825762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 40442641 - 40442506
Alignment:
Q  152 aaaatcttttattttaaggacaaaatttaggtgcattttct-tacgtgcttttcgtgtggttcttcacatgaaattaactttgtg--gttatagaaaaat 248  Q
    |||| ||||||| || ||| |||| ||||||||||||| || ||| |  ||||||| ||||||||||||| ||||| | ||||||  ||||||  |||||    
T  40442641 aaaaacttttatctttaggccaaattttaggtgcatttcctgtacatatttttcgtatggttcttcacataaaattcattttgtgtggttataacaaaat 40442542  T
Q  249 ttgagaaaattatggatttgataaatcatggatagt 284  Q
    ||||||||| | || |||||| |||| || ||||||    
T  40442541 ttgagaaaaatgtgaatttgagaaattatagatagt 40442506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 40503798 - 40503663
Alignment:
Q  152 aaaatcttttattttaaggacaaaatttaggtgcattttct-tacgtgcttttcgtgtggttcttcacatgaaattaactttgtg--gttatagaaaaat 248  Q
    |||| ||||||| || ||| |||| ||||||||||||| || ||| |  ||||||  ||||||||||||| ||||| | ||||||  ||||||  |||||    
T  40503798 aaaaacttttatctttaggccaaattttaggtgcatttcctatacatatttttcgcatggttcttcacataaaattcattttgtgtggttataacaaaat 40503699  T
Q  249 ttgagaaaattatggatttgataaatcatggatagt 284  Q
    ||||||||| | ||||||||| |||| || ||||||    
T  40503698 ttgagaaaaatgtggatttgagaaattatagatagt 40503663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 2818686 - 2818719
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  2818686 tccttaggtgcttttcgtatgattcttaactaaa 2818719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 7737216 - 7737183
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  7737216 tccttaggtgcttttcgtatgattcttaactaaa 7737183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 20893036 - 20893003
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  20893036 tccttaggtgcttttcgtatgattcttaactaaa 20893003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 9933742 - 9933694
Alignment:
Q  167 aaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttctt 215  Q
    ||||| ||||||||||| || ||||||| ||||||||||| ||||||||    
T  9933742 aaggagaaaatttaggtacaatttcttaggtgcttttcgtatggttctt 9933694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 18034513 - 18034461
Alignment:
Q  173 aaaatttaggtgcattttcttacgtgcttttcgtgtggttcttcacatgaaat 225  Q
    |||| |||||||||||||||||  | ||||||||||||| |||||||| ||||    
T  18034513 aaaacttaggtgcattttcttaaatacttttcgtgtggtacttcacataaaat 18034461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 25795005 - 25794935
Alignment:
Q  153 aaatcttttattttaaggacaaaatttaggtgcatttt-cttacgtgcttttcgtgtggttcttcacatga 222  Q
    ||||| |||||||||||||||||| ||||||  ||||| ||||| |||||||||| | |||||||||||||    
T  25795005 aaatcatttattttaaggacaaaacttaggttaatttttcttacatgcttttcgtatagttcttcacatga 25794935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 20476612 - 20476556
Alignment:
Q  159 tttattttaaggacaaaatttaggtgcattttcttacgtgcttttcgtgtggttctt 215  Q
    ||||||||||||| |||| |||||| || || |||| ||||||||||| ||||||||    
T  20476612 tttattttaaggagaaaacttaggtacaattccttaggtgcttttcgtatggttctt 20476556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 14393581 - 14393614
Alignment:
Q  332 tccttaggtgcttttcgtatgattcctaactaaa 365  Q
    ||||||||||||||||||||||||| ||||||||    
T  14393581 tccttaggtgcttttcgtatgattcttaactaaa 14393614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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