View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_4 (Length: 791)

Name: NF2071_low_4
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_4
NF2071_low_4
[»] chr3 (1 HSPs)
chr3 (47-777)||(18268587-18269318)


Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 47 - 777
Target Start/End: Complemental strand, 18269318 - 18268587
Alignment:
Q  47 ctacgctcaagtgccctactccatgatttgaggtattgtccannnnnnn-gtctttgagtgggccctcacagatttttcatttttaaaagatgtctcatt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18269318 ctacgctcaagtgccctactccatgatttgaggtattgtccattttttttgtctttgagtgggccctcgcagatttttcatttttaaaagatgtctcatt 18269219  T
Q  146 ggattcaggagtatatgtgttgaatatgaactaccttttgtgtcgactcccaagtattgtgggattttaaggtgtattggtacatatatcctccgatcaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18269218 ggattcaggagtatatgtgttgaatatgaactaccttttgtgtcgactcccaagtattgtgggattttaaggtgtattggtacatatatcctccgatcaa 18269119  T
Q  246 ggataaagtggagtttgtgggaccactttccaattgaagtcaacaagttctttgtcaagactagaaatctgcaaccatgtggtataagagtcaccatgat 345  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  18269118 ggataaagtggagtttgtgggcccactttccaattgaagtcaacaagttctttgtcaagaccagaaatctgcaaccatgtggtataagagacaccatgat 18269019  T
Q  346 cccggtcaaaattgactcttccacgaaaatgaaataagttgatctcatcctcaaacatcctaaattttttgtgtacctaaaatgaatcaagctcaac-nn 444  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       
T  18269018 cccagtcaaaattgactcttccacgaaaatgaaataagttgatctcatcctcaaacatcctaaattttttgtgtacctaaaatgaatcaagttcaacaaa 18268919  T
Q  445 nnnnnnnnnnnttgtatcaaactcaaaccaagttttaaactcaaccaattcttacctaatagaattcacctaaaacaaattcgatttaactcatttctaa 544  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18268918 aaaaaaaaaaattgtatcaaactcaaaccaagttttaaactcaaccaattcttacctaatagaattcacctaaaacaaattcgatttaactcatttctaa 18268819  T
Q  545 ctcaatttacaagtgttagcaccaaattgaatgatccgataaacttgaagatccaatctaaaccaactagactcatttaatatannnnnnnctttcaatt 644  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||        |||| ||||    
T  18268818 ctcaatttacaagtattagcaccaaattgaatgattcgataaacttcaagatccaatctaaaccaattagactcatttaatatttttttttcttttaatt 18268719  T
Q  645 attatgtccaaaatgaaccaaaccgaacccttacacctacaagtgacatctcaataacacccaaattcacttttcgtctctctatcacgcgaaacacagt 744  Q
    || | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18268718 atgacgtcc-aaatgaaccaaaccgaaccgttacacctacaagtgacatctcaataacacccaaattcacttttggtctctctatcacgcgaaacacagt 18268620  T
Q  745 agcttgcttgttgtcttgcatacccaaccaacc 777  Q
    |||||||||||||||||||||||||||||||||    
T  18268619 agcttgcttgttgtcttgcatacccaaccaacc 18268587  T

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