View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_43 (Length: 398)
Name: NF2071_low_43
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 39227809 - 39227421
Alignment:
| Q |
1 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227809 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttc |
39227710 |
T |
|
| Q |
101 |
aattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227709 |
aattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
39227610 |
T |
|
| Q |
201 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227609 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatca |
39227510 |
T |
|
| Q |
301 |
acaaactctatggtgaaattccatcnnnnnnnnctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
389 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227509 |
acaaactctatggtgaaattccatcttttttttctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
39227421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 25547008 - 25546622
Alignment:
| Q |
1 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25547008 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttacttcatcttgatcttgcaaactgtggtttgaaaggttc |
25546909 |
T |
|
| Q |
101 |
aattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546908 |
aattccacatgagctacgaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
25546809 |
T |
|
| Q |
201 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25546808 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatca |
25546709 |
T |
|
| Q |
301 |
acaaactctatggtgaaattccatcnnnnnnnnctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
389 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25546708 |
acaaactc--tggtgaaattccatcttttttttctgagttaccaaatttggaagtgttaaagctttggcataacaacttcacaggttct |
25546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 16733490 - 16733618
Alignment:
| Q |
90 |
ttgaaaggttcaattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattag |
189 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||| |||| ||||| |||||||||||||||| |||||||| | ||||| ||||||||| |||||| |
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| T |
16733490 |
ttgaaaggttcaattccacttgagttaggtcaacttaacaagctagatacacttttcttgcaaaaaaatcaactcactggttttattccacctgaattag |
16733589 |
T |
|
| Q |
190 |
ggaatcttagtagtttgaaatctcttgat |
218 |
Q |
| |
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| ||| | ||||| ||||| |||||||| |
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|
| T |
16733590 |
gtaatttgagtagattgaatgctcttgat |
16733618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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