View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_44 (Length: 395)
Name: NF2071_low_44
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_44 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 36 - 395
Target Start/End: Original strand, 46920349 - 46920707
Alignment:
| Q |
36 |
aaatatctgttgaaaaacatgagaagtcaacatcgctgcatgagaactgatgcaattcgtaccaaaatccaaataaacgctcatacaccatttaacctta |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920349 |
aaatatctgttgaaaaacatgagaagtcaacatcgctgcatgagaactgatgcaattcgtaccaaaatccaaataaacgctcatacaccatttaacctta |
46920448 |
T |
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| Q |
136 |
acatcatcnnnnnnncacaatgaacatacatcctcaaaacctactaggtagtttactcgaatcagctgtttcaacacattgttccatcttaggtcgtacc |
235 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920449 |
acatcatcaaaaaa-cacaatgaacatacatcctcaaaacctactaggttgtttactcgaatcagctgtttcaacacattgttccatcttaggtcgtacc |
46920547 |
T |
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| Q |
236 |
atccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacctcgtcaacatgtactccaaactcgaccttcttaactcag |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920548 |
atccatgcacacatcattcgcacacatgtcaccccacttccatctttcctctccaaccacctcgtcaacatgtactccaaactcgaccttcttaactcag |
46920647 |
T |
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| Q |
336 |
ctcaacacgttctctcactcactcacctccgcaccgttgttacttggacctctcttatct |
395 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920648 |
ctcaacacgttctctcattcactcacctccgcaccgttgttacttggacctctcttatct |
46920707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 97 - 395
Target Start/End: Original strand, 38310567 - 38310864
Alignment:
| Q |
97 |
ccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcnnnnnnncacaatgaacatacatcctcaaaacctactaggtagtttactcgaa |
196 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310567 |
ccaaaatccaaataaaccctcatacaccatttaaccttaacatcatcaaaaaa-cacaatgaacatacatcctcaaaacctactaggtagtttactcgaa |
38310665 |
T |
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| Q |
197 |
tcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310666 |
tcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacc |
38310765 |
T |
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| Q |
297 |
tcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttctctcactcactcacctccgcaccgttgttacttggacctctcttatct |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310766 |
tcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttctctcactcactcacctccgcaccgttgttacttggacctctcttatct |
38310864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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