View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_47 (Length: 382)

Name: NF2071_low_47
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_47
NF2071_low_47
[»] chr1 (3 HSPs)
chr1 (1-91)||(51047808-51047899)
chr1 (152-253)||(51047960-51048063)
chr1 (319-351)||(51048129-51048161)
[»] chr2 (3 HSPs)
chr2 (1-91)||(1775894-1775985)
chr2 (152-242)||(1775741-1775829)
chr2 (319-351)||(38376466-38376498)
[»] chr3 (2 HSPs)
chr3 (319-356)||(24088053-24088090)
chr3 (319-358)||(44430082-44430121)
[»] chr7 (1 HSPs)
chr7 (319-351)||(46290497-46290529)
[»] scaffold0031 (2 HSPs)
scaffold0031 (152-197)||(105759-105805)
scaffold0031 (1-79)||(106556-106638)
[»] chr5 (1 HSPs)
chr5 (319-355)||(13760964-13761000)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 51047808 - 51047899
Alignment:
Q  1 tgtgtgggagaggagagatcaggatgacagggtcggttagcaatggttatggaaggagataag-aactaagaaagggaaagatgttcgcttc 91  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51047808 tgtgtgggagaggagagatcaggatggcagggtcggttagcaatggttatggaaggagataagaaactaagaaagggaaagatgttcgcttc 51047899  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 51047960 - 51048063
Alignment:
Q  152 ctaactattttgtaccaaaaaacttaatttaattatttaagctattcaacattt--nnnnnnnnncaaatcaaatctagaattaatcatttttgtactca 249  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  51047960 ctaactattttgtacaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaaaaaacaaatcaaatctagaattaatcatttttgtactca 51048059  T
Q  250 agga 253  Q
    ||||    
T  51048060 agga 51048063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 51048129 - 51048161
Alignment:
Q  319 accaaacaatccatcaaatctaccatatttctc 351  Q
    ||||||||||||||||||| |||||||||||||    
T  51048129 accaaacaatccatcaaatataccatatttctc 51048161  T

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Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1775985 - 1775894
Alignment:
Q  1 tgtgtgggagaggagagatcaggatgacagggtcggttagcaatggttatggaaggagataag-aactaagaaagggaaagatgttcgcttc 91  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  1775985 tgtgtgggagaggagagatcaggatggcagggtcggttagcaatggttatggaagtagataagaaactaagaaagggaaagatgttcgcttc 1775894  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 1775829 - 1775741
Alignment:
Q  152 ctaactattttgtaccaaaaaa-cttaatttaattatttaagctattcaacatttnnnnnnnnncaaatcaaatctagaattaatcattttt 242  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  1775829 ctaactattttgaaccaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaa---aaatcaaatctagaattaatcattttt 1775741  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 38376466 - 38376498
Alignment:
Q  319 accaaacaatccatcaaatctaccatatttctc 351  Q
    |||||||||||||||||||||||| ||||||||    
T  38376466 accaaacaatccatcaaatctaccctatttctc 38376498  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 24088053 - 24088090
Alignment:
Q  319 accaaacaatccatcaaatctaccatatttctctcttc 356  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24088053 accaaacaatccatcaaatctactatatttctctcttc 24088090  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 44430121 - 44430082
Alignment:
Q  319 accaaacaatccatcaaatctaccatatttctctcttctc 358  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  44430121 accaaacaatacatcaaatctactatatttctctcttctc 44430082  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 46290529 - 46290497
Alignment:
Q  319 accaaacaatccatcaaatctaccatatttctc 351  Q
    |||||||||||||||||||||||||||||||||    
T  46290529 accaaacaatccatcaaatctaccatatttctc 46290497  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 105805 - 105759
Alignment:
Q  152 ctaactattttgtaccaaaaaa-cttaatttaattatttaagctatt 197  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  105805 ctaattattttgtatcaaaaaaacttaatttaattatttaagctatt 105759  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 106638 - 106556
Alignment:
Q  1 tgtgtgggagaggagagatcaggatgacagggtcggttagcaatggttatggaaggag---ataag-aactaagaaagggaaa 79  Q
    ||||||||||| ||||||| | ||||   |||| ||||| ||||||||||||||||||   ||||| ||||||||||||||||    
T  106638 tgtgtgggagaagagagattaagatgggtgggttggttaacaatggttatggaaggagattataagaaactaagaaagggaaa 106556  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 13761000 - 13760964
Alignment:
Q  319 accaaacaatccatcaaatctaccatatttctctctt 355  Q
    |||||||||||||||||||||||  ||||||||||||    
T  13761000 accaaacaatccatcaaatctactctatttctctctt 13760964  T

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