View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_48 (Length: 379)
Name: NF2071_low_48
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 29837570 - 29837220
Alignment:
| Q |
18 |
gaatgctgatacaaacaagttacaataaatcaacctaagaatctctatgattcatagaaatgttgattcattttattgaagtattatgatattgaaaacc |
117 |
Q |
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| T |
29837570 |
gaatgctgatacaaacaagttacaataaatcaacctaagaatctctatgattcatagaaatgttgattcattttattgaagtattatgatattgaaaacc |
29837471 |
T |
|
| Q |
118 |
acttacaaggaagctaagagattaacacactaaaaagtcacaaacaagactaattaaatgccaagttgccaaccaacaaaaagtggtattaggttgctca |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29837470 |
acttacaaggaagctaagagattaacac--taaaaagtcactaacaagactaattaaatgccaagttgccaaccaacaaaaagtagtattaggttgctca |
29837373 |
T |
|
| Q |
218 |
cgagaagcattacatttaacttataatggcactctccattctccacatcattactttatataaacaaacaaatattttattcattagcattatttttgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29837372 |
cgagaagcattacatttaacttataatggcactctccattctccacatcattactttatataaacaaacaaatattttattcattagcattatttttgta |
29837273 |
T |
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| Q |
318 |
cccttttttaggctcttgtcatcatcaccattaatgattgtctgttattcatc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29837272 |
cccttttttaggctcttgtcatcatcaccattaatgattgtctcttattcatc |
29837220 |
T |
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