View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_49 (Length: 376)

Name: NF2071_low_49
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_49
NF2071_low_49
[»] chr4 (7 HSPs)
chr4 (19-293)||(53488617-53488891)
chr4 (291-369)||(53488916-53488994)
chr4 (36-174)||(53495369-53495507)
chr4 (30-148)||(53499301-53499419)
chr4 (49-148)||(53493009-53493108)
chr4 (73-160)||(53502411-53502498)
chr4 (51-147)||(52591047-52591143)
[»] chr3 (2 HSPs)
chr3 (74-160)||(38214059-38214145)
chr3 (74-160)||(38218278-38218364)
[»] chr7 (3 HSPs)
chr7 (36-205)||(37188878-37189047)
chr7 (74-126)||(32709833-32709885)
chr7 (74-126)||(32715055-32715107)
[»] chr8 (3 HSPs)
chr8 (74-172)||(35018036-35018134)
chr8 (74-160)||(42991360-42991446)
chr8 (72-134)||(33811087-33811149)
[»] chr2 (3 HSPs)
chr2 (73-138)||(16942678-16942743)
chr2 (73-138)||(17013343-17013408)
chr2 (73-126)||(37638856-37638909)
[»] chr1 (1 HSPs)
chr1 (72-134)||(47495928-47495990)
[»] chr6 (3 HSPs)
chr6 (74-126)||(10379776-10379828)
chr6 (74-126)||(10411402-10411454)
chr6 (73-132)||(33450450-33450509)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 53488617 - 53488891
Alignment:
Q  19 aaacacaaccattggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53488617 aaacacaaccattggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcggc 53488716  T
Q  119 attccatagacttgaatataatctcattggctgcttctttggatatggaacaccttcactctccaagtttttgaattccctaattggtctgccgtcaata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53488717 attccatagacttgaatataatctcattggctgcttctttggatatggaacaccttcactctccaagtttttgaattccctaattggtctgccgtcaata 53488816  T
Q  219 gaaaatctgaaaagcaaagacaagttgatcaagaggattatgagatcatgtaaatttagagaatttaaaatacca 293  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53488817 gaaaatctgaaaagcaaggacaagttgatcaagaggattatgagatcatgtaaatttagagaatttaaaatacca 53488891  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 53488916 - 53488994
Alignment:
Q  291 ccaattggtccatataatttgttcatattgtgtacacaaatagttcctatgtgtttcaaattttgtatatttatctctg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53488916 ccaattggtccatataatttgttcatattgtgtacacaaatagttcctatgtgtttcaaattttgtatatttatctctg 53488994  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 53495507 - 53495369
Alignment:
Q  36 ttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaat 135  Q
    ||||| |||||| | || ||||| |||||||| |   |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53495507 ttgaaattcctatatgatgcagtgaatggagcatttgtccaatctgtcttgacaagaccacctcttgttgcccaatcatcagcattccatagacttgaat 53495408  T
Q  136 ataatctcattggctgcttctttggatatggaacacctt 174  Q
    |||  |||||||| || ||||||||| ||| ||| ||||    
T  53495407 atatcctcattggttgattctttggaaatgcaactcctt 53495369  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 53499419 - 53499301
Alignment:
Q  30 ttggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagac 129  Q
    ||||| |||||||| ||  |||||||||| || |||||||    ||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||    
T  53499419 ttggcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagac 53499320  T
Q  130 ttgaatataatctcattgg 148  Q
    |||| ||||  ||||||||    
T  53499319 ttgagtatatcctcattgg 53499301  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 53493108 - 53493009
Alignment:
Q  49 aagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattgg 148  Q
    |||||||||| || |||||||    ||||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||| ||||  ||||||||    
T  53493108 aagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattgg 53493009  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 53502498 - 53502411
Alignment:
Q  73 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggctgcttctttgg 160  Q
    |||||||||| || || || ||||||||||||||||| | ||| |||||||| | ||||||||||| ||||||||| || ||||||||    
T  53502498 tccaatctgtcttgactagtccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgg 53502411  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 52591143 - 52591047
Alignment:
Q  51 gaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattg 147  Q
    |||||||| ||||| |||||   |||||| |||||| | ||||| || ||||| ||||||| ||| |||| ||| |||||||||||||  |||||||    
T  52591143 gaagcagtgaatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattg 52591047  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 38214059 - 38214145
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggctgcttctttgg 160  Q
    |||||| |||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| || ||||||||    
T  38214059 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 38214145  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 38218278 - 38218364
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggctgcttctttgg 160  Q
    |||||| |||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| || ||||||||    
T  38218278 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 38218364  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 37189047 - 37188878
Alignment:
Q  36 ttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaat 135  Q
    |||||||| ||| ||||||||||||| ||||| |    ||||||||| || ||||| ||||||||||| |||||||||||||||||||| ||||| ||||    
T  37189047 ttgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaat 37188948  T
Q  136 ataatctcattggctgcttctttggatatggaacaccttcactctccaagtttttgaattccctaattgg 205  Q
    | | ||||||||| ||  | || ||  |||||||||| |     |||| |||||||||||||||||||||    
T  37188947 agattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattgg 37188878  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 32709885 - 32709833
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 126  Q
    ||||||||||||| | |  ||||||||||||||||||||||| ||||||||||    
T  32709885 ccaatctgttttctctaatccacctcttgttgcccaatcatctgcattccata 32709833  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 32715107 - 32715055
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 126  Q
    ||||||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  32715107 ccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattccata 32715055  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 35018134 - 35018036
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggctgcttctttggatatggaacacc 172  Q
    |||||| |||||||| |  ||||||||||| |||||||||||||||||||| || || ||||| | ||||||||| || ||||||||| | ||||||||    
T  35018134 ccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaatagattctcattggttggttctttggaaaaggaacacc 35018036  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 42991446 - 42991360
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggctgcttctttgg 160  Q
    |||||| |||||||| | |||||||||||| |||||||| ||||| ||||| ||||||||||||| |||||| || || ||||||||    
T  42991446 ccaatcagttttcaccaaaccacctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcatcggttggttctttgg 42991360  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 33811087 - 33811149
Alignment:
Q  72 ttccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaa 134  Q
    ||||||| ||||||  |||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  33811087 ttccaatttgttttttcaagtccacctcttgtagcccaatcatctgcattccatacacttgaa 33811149  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 16942743 - 16942678
Alignment:
Q  73 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatata 138  Q
    ||||||||||||||||||  |||||||| || ||||||| ||| |||||||| |||||||||||||    
T  16942743 tccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatata 16942678  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 17013408 - 17013343
Alignment:
Q  73 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatata 138  Q
    ||||||||||||||||||  |||||||| || ||||||| ||| |||||||| |||||||||||||    
T  17013408 tccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatata 17013343  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 37638909 - 37638856
Alignment:
Q  73 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 126  Q
    ||||||||||||||||| ||||||||  ||||||||||||||| ||||||||||    
T  37638909 tccaatctgttttcacacgaccaccttgtgttgcccaatcatctgcattccata 37638856  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 47495990 - 47495928
Alignment:
Q  72 ttccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaa 134  Q
    ||||||| ||||||  |||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  47495990 ttccaatttgttttttcaagtccacctcttgtagcccaatcatctgcattccatacacttgaa 47495928  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 10379776 - 10379828
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 126  Q
    ||||||||||||| | | |||||| ||||| ||||||||||||||||||||||    
T  10379776 ccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattccata 10379828  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 10411454 - 10411402
Alignment:
Q  74 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 126  Q
    ||||||||||||| | | |||||| ||||| ||||||||||||||||||||||    
T  10411454 ccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattccata 10411402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 33450509 - 33450450
Alignment:
Q  73 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttg 132  Q
    |||||| |||||| ||||| ||||||||||| ||||||| ||| |||||||||| |||||    
T  33450509 tccaatttgttttaacaagtccacctcttgtggcccaattatctgcattccataaacttg 33450450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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