View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_52 (Length: 368)
Name: NF2071_low_52
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 47 - 300
Target Start/End: Original strand, 29892976 - 29893229
Alignment:
| Q |
47 |
tatcacctgaaactatggctatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaag |
146 |
Q |
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| T |
29892976 |
tatcacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaag |
29893075 |
T |
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| Q |
147 |
aaacacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatga |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29893076 |
aaacacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatga |
29893175 |
T |
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| Q |
247 |
cattgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29893176 |
tattgtaatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
29893229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 47 - 300
Target Start/End: Original strand, 29887603 - 29887856
Alignment:
| Q |
47 |
tatcacctgaaactatggctatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaag |
146 |
Q |
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| T |
29887603 |
tatcacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttgaatccctatacaag |
29887702 |
T |
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| Q |
147 |
aaacacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatga |
246 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||| |
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| T |
29887703 |
aaatacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggtgagtcgagttgggtcacatatctcttctaatatgagaaaatttgatgg |
29887802 |
T |
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| Q |
247 |
cattgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
300 |
Q |
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| T |
29887803 |
cattgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
29887856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 29887942 - 29887998
Alignment:
| Q |
301 |
gtgattagaattattgaatcaaaccaacgttcatatatgtttcttcttaatcattta |
357 |
Q |
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| T |
29887942 |
gtgattagaattattgaatcaaaccaacattcatatatgtttcttcttaatccttta |
29887998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 29893968 - 29894010
Alignment:
| Q |
324 |
ccaacgttcatatatgtttcttcttaatcatttattgtctctg |
366 |
Q |
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| T |
29893968 |
ccaacgttcatatatgtttcttcttaatcctttattgtctctg |
29894010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 29887594 - 29887629
Alignment:
| Q |
19 |
gggaaagattatcacctgaaaatatgactatcacct |
54 |
Q |
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| T |
29887594 |
gggaaagattatcacctgaaaatatgactatcacct |
29887629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 29892967 - 29893002
Alignment:
| Q |
19 |
gggaaagattatcacctgaaaatatgactatcacct |
54 |
Q |
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| T |
29892967 |
gggaaagattatcacctgaaaatatgactatcacct |
29893002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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