View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_53 (Length: 361)

Name: NF2071_low_53
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_53
NF2071_low_53
[»] chr5 (3 HSPs)
chr5 (11-344)||(41542233-41542566)
chr5 (168-309)||(41558395-41558536)
chr5 (38-70)||(32630771-32630803)
[»] chr6 (3 HSPs)
chr6 (33-70)||(25038107-25038144)
chr6 (14-70)||(4323905-4323961)
chr6 (34-70)||(7250999-7251035)
[»] chr3 (3 HSPs)
chr3 (9-70)||(51733106-51733167)
chr3 (33-70)||(13799490-13799527)
chr3 (36-79)||(15544682-15544726)
[»] chr8 (2 HSPs)
chr8 (36-70)||(11815818-11815852)
chr8 (41-102)||(10002166-10002229)
[»] chr7 (3 HSPs)
chr7 (31-88)||(42720907-42720965)
chr7 (38-70)||(31924417-31924449)
chr7 (47-79)||(49107821-49107853)
[»] chr1 (2 HSPs)
chr1 (12-70)||(17831567-17831625)
chr1 (36-70)||(29127273-29127307)
[»] scaffold0011 (1 HSPs)
scaffold0011 (13-70)||(240057-240114)
[»] chr4 (1 HSPs)
chr4 (13-102)||(56049843-56049932)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 41542566 - 41542233
Alignment:
Q  11 cacagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaacacataattttatgtaatcgaatgtgttggtgatacaaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41542566 cacagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaacacataattttatgtaatctaatgtgttggtgatacaaag 41542467  T
Q  111 atcagaagtgtttgtgcgcttcatagatcagaaatgtccgtgattcagagataattgttgacaatcaatacaagatcaacaatattaaaagagtattgct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41542466 atcagaagtgtttgtgcgcttcatagatcagaaatgtccgtgatacagagataattgttgacaatcaatacaagatcaacaatattaaaagagtattgct 41542367  T
Q  211 atccatatgatccatcatgtctcgaaattctgactactcacctaaaaagacagatggatgcatgtaataaatgtctctttttgaactatgtttgttctca 310  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41542366 atccatatgatccatcatgtctcgaaattctgactactcgcctaaaaagacagatggatgcatgtaataaatgtctctttttgaactatgtttgttctca 41542267  T
Q  311 aatcctaatttgaacagtaataatataattaaag 344  Q
    ||||||||||||||||||||||||||||||||||    
T  41542266 aatcctaatttgaacagtaataatataattaaag 41542233  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 168 - 309
Target Start/End: Complemental strand, 41558536 - 41558395
Alignment:
Q  168 ttgacaatcaatacaagatcaacaatattaaaagagtattgctatccatatgatccatcatgtctcgaaattctgactactcacctaaaaagacagatgg 267  Q
    |||| |||||||||||||||||| ||| ||||||||| ||  |||||||||||||||||||||  |||||||||||  ||||||| ||||||||||||||    
T  41558536 ttgaaaatcaatacaagatcaactatactaaaagagtgttagtatccatatgatccatcatgttgcgaaattctgatgactcacccaaaaagacagatgg 41558437  T
Q  268 atgcatgtaataaatgtctctttttgaactatgtttgttctc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41558436 atgcatgtaataaatgtctctttttgaactatgtttgttctc 41558395  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 32630803 - 32630771
Alignment:
Q  38 tgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||| |||||||||||||||||||||||||    
T  32630803 tgacacgctgacaccgataataatttgagaaaa 32630771  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 25038144 - 25038107
Alignment:
Q  33 gatactgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  25038144 gatactgacacgttgacaccgttaataatttgagaaaa 25038107  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 4323961 - 4323905
Alignment:
Q  14 agacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||||||||||   | |||||||||||||||||| |||||||||||| ||||||    
T  4323961 agacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaa 4323905  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 7251035 - 7250999
Alignment:
Q  34 atactgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7251035 atactgacacgttgacaccaataataatttgagaaaa 7250999  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 51733106 - 51733167
Alignment:
Q  9 agcacagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||| ||||| |||||||  || |||||||||| ||||||||||||||||| |||||||||    
T  51733106 agcaccgacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaa 51733167  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 13799490 - 13799527
Alignment:
Q  33 gatactgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  13799490 gatacagacacgttgacaccgataatagtttgagaaaa 13799527  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 15544682 - 15544726
Alignment:
Q  36 actgacacgttgacaccgataataatttgagaaaa-cacataatt 79  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||    
T  15544682 actgacacgttgacaccgctaataatttgataaaatcacataatt 15544726  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 11815818 - 11815852
Alignment:
Q  36 actgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||||||||||||| |||||||||||||||||    
T  11815818 actgacacgttgacaccaataataatttgagaaaa 11815852  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 10002229 - 10002166
Alignment:
Q  41 cacgttgacaccgataataatttgagaaaa--cacataattttatgtaatcgaatgtgttggtg 102  Q
    ||||||||||||||||||||||||| ||||   ||||||||| ||||||||  |||||| ||||    
T  10002229 cacgttgacaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgtcggtg 10002166  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 42720965 - 42720907
Alignment:
Q  31 atgatactgacacgttgacaccgataataatttgagaaaa-cacataattttatgtaat 88  Q
    |||| |||||||||||||||||| ||||||||||| |||| |||||||||  |||||||    
T  42720965 atgacactgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaat 42720907  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 31924417 - 31924449
Alignment:
Q  38 tgacacgttgacaccgataataatttgagaaaa 70  Q
    |||||||||||||||||||||||||| ||||||    
T  31924417 tgacacgttgacaccgataataatttaagaaaa 31924449  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 49107821 - 49107853
Alignment:
Q  47 gacaccgataataatttgagaaaacacataatt 79  Q
    ||||||| |||||||||||||||||||||||||    
T  49107821 gacaccgctaataatttgagaaaacacataatt 49107853  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 17831625 - 17831567
Alignment:
Q  12 acagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa 70  Q
    |||||||| |||||||| || || |||||||||  ||||||| ||||||||||||||||    
T  17831625 acagacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaa 17831567  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 29127273 - 29127307
Alignment:
Q  36 actgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||||||||||||||||||| |||||||||||    
T  29127273 actgacacgttgacaccgataatcatttgagaaaa 29127307  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 240114 - 240057
Alignment:
Q  13 cagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa 70  Q
    ||||||||||||||||  |||| || |||| ||||||| | |||||||||||||||||    
T  240114 cagacacggacaccggacatgacacggacatgttgacaactataataatttgagaaaa 240057  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 56049843 - 56049932
Alignment:
Q  13 cagacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaacacataattttatgtaatcgaatgtgttggtg 102  Q
    ||||||||||||||||  | || || ||||| | |||||||||||||||||||||||  ||||| ||  ||||||||  |||||| ||||    
T  56049843 cagacacggacaccggacacgacacggacacatcgacaccgataataatttgagaaatgacatagttcaatgtaatcatatgtgtcggtg 56049932  T

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