View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_low_59 (Length: 341)
Name: NF2071_low_59
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_59 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 26128747 - 26129073
Alignment:
| Q |
17 |
agtcattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttctt |
116 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26128747 |
agtcattaggaaaaaagaaaactatgatgcatccagtaagaactactatgattacagcggtaacaatctttgatatgcttagagaataagggttgttctt |
26128846 |
T |
|
| Q |
117 |
catcaagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatata |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26128847 |
catcaagggtccttctctttctctgtgctcaatcattgtatccaccaccacctcaaagattgagattgaaatggtagtattgtttagttctggttatata |
26128946 |
T |
|
| Q |
217 |
gggttttgaag--ttttggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttcgaaactgagtttgat |
314 |
Q |
| |
|
||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
|
|
| T |
26128947 |
gggttctgaagcttataggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttctaaactaagttcgat |
26129046 |
T |
|
| Q |
315 |
tgaactaaaagcctctcaaatattctt |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26129047 |
tgaactaaaagcctctcaaatattctt |
26129073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 26056219 - 26056536
Alignment:
| Q |
17 |
agtcattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttctt |
116 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||| ||||||||| |||||||||||| ||||| ||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
26056219 |
agtctttaggaaaaaagaaaactatgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttctt |
26056318 |
T |
|
| Q |
117 |
catcaagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatata |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
26056319 |
catcaagggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatata |
26056418 |
T |
|
| Q |
217 |
gggttttgaagttttggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttcgaaactgagtttgattg |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| | || |||||||| |||||||| |
|
|
| T |
26056419 |
gggttttgaagctttggagggttaattaagaaatggagaattgggttgtcagtttgagcacagatattcagtacttcgactttgaaactgaatttgattg |
26056518 |
T |
|
| Q |
317 |
aactaaaagcctctcaaa |
334 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
26056519 |
aactactagcctctcaaa |
26056536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 26085456 - 26085780
Alignment:
| Q |
17 |
agtcattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttctt |
116 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||| | ||||||| |||||||||||| ||||| ||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
26085456 |
agtcattaggaaaatagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttctt |
26085555 |
T |
|
| Q |
117 |
catcaagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatata |
216 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26085556 |
catcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggtagttttgttttgttctggttatata |
26085655 |
T |
|
| Q |
217 |
gggttttgaagttttggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttcgaaactgagtttgattg |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| | || || ||||| |||||||| |
|
|
| T |
26085656 |
gggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcgcagatattcagtacttcgactttgatactgaatttgattg |
26085755 |
T |
|
| Q |
317 |
aactaaaagcctctcaaatattctt |
341 |
Q |
| |
|
||||| ||||||||||| |||||| |
|
|
| T |
26085756 |
aactactagcctctcaaacattctt |
26085780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 26067881 - 26068150
Alignment:
| Q |
17 |
agtcattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttctt |
116 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||| ||||||||| |||||||||||| ||||| ||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
26067881 |
agtctttaggaaaaaagaaaactatgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttctt |
26067980 |
T |
|
| Q |
117 |
catcaagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatata |
216 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
26067981 |
catcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatata |
26068080 |
T |
|
| Q |
217 |
gggttttgaagttttggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattca |
286 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
26068081 |
gggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca |
26068150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 26111793 - 26112113
Alignment:
| Q |
17 |
agtcattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttctt |
116 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |||||||| |||||||||||| ||||| ||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
26111793 |
agtcattaggaaaaaagaaaactatgatgcatccaataagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttctt |
26111892 |
T |
|
| Q |
117 |
catcaagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatata |
216 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
26111893 |
catcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatata |
26111992 |
T |
|
| Q |
217 |
gggttttgaag--ttttggagggt---taattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttcgaaactgagttt |
311 |
Q |
| |
|
||||| ||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||| ||| |
|
|
| T |
26111993 |
gggttctgaagcttataggagggttaataattaagaaatgaagaattgggtggtcagtttgagcacagatattc---------actttgaaactgaattt |
26112083 |
T |
|
| Q |
312 |
gattgaactaaaagcctctcaaatattctt |
341 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
26112084 |
gattgaactactagcctctcaaatattctt |
26112113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 26121320 - 26121533
Alignment:
| Q |
17 |
agtcattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttctt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
26121320 |
agtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaacgattattgatatgagtagagaatgagagttgttctt |
26121419 |
T |
|
| Q |
117 |
catcaagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaag------attgaga--ttgaaatggtagttttgtttagttctg |
208 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||| |||||| ||||||||| ||||||| |||| |||||| |||||||| |||||| |
|
|
| T |
26121420 |
catcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatggtaattttgttttgttctg |
26121519 |
T |
|
| Q |
209 |
gttatatagggttt |
222 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
26121520 |
gttatgtagggttt |
26121533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 26038317 - 26038497
Alignment:
| Q |
20 |
cattaggaaaaaagaaaagtaagatgcatcctgtaagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcat |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||| | |||||| ||||| ||| ||||| ||| |||||||||||||||||| ||| |
|
|
| T |
26038317 |
cattaggaaaaaagaaagctaagatgcatccaataagaacaccaattactacagcagtaacgatccttgatttgcgtagagaatgagggttgtttcgcat |
26038416 |
T |
|
| Q |
120 |
caagggtccttctctttctctacgctcaatcattgtatacaccaccacctcaaagattgagattgaaatggtagttttgtt |
200 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26038417 |
taagggtccttctctttctctgcgcccaatcattgtagctaccaccacctcaaagactgagattgagatggtagttttgtt |
26038497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 26048989 - 26049083
Alignment:
| Q |
192 |
agttttgtttagttctggttatatagggttttgaagttttggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattca |
286 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
26048989 |
agttttgttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca |
26049083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 26120847 - 26120951
Alignment:
| Q |
69 |
tacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcattgtatacaccaccacc |
168 |
Q |
| |
|
||||| |||| | ||| ||||| ||| |||||| | ||| ||||| | ||| |||||||||||| ||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
26120847 |
tacagtggtagcgatccttgatttgcgtagagattaaggattgttttgcattaagggtccttctatttctttgcgcccaatcattgaatacaccaccacc |
26120946 |
T |
|
| Q |
169 |
tcaaa |
173 |
Q |
| |
|
||||| |
|
|
| T |
26120947 |
tcaaa |
26120951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7817 times since January 2019
Visitors: 7737