View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_6 (Length: 712)
Name: NF2071_low_6
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 583; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Complemental strand, 32461571 - 32460924
Alignment:
| Q |
19 |
attagtgttgttatgccagcacttgagtcaacgagttaaaatagctgactcgtcaacaaactcagcaactttcattgaaatttctaagacgccacatttt |
118 |
Q |
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| T |
32461571 |
attagtgttgttatgccagcacttgagtcaacgagttaaaatagctgactcgtcaacaaactcggcaactttccttgaaatttctaagacgccacatttt |
32461472 |
T |
|
| Q |
119 |
actcctccttctttctctacctataaatactagtaccannnnnnn-ccctaagttcatattcaaacacataattttctcaattccaatttattcaacttt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32461471 |
actcctccttctttctctacctataaatactagtaccattttttttccctaagttcatattcaaacacataattttctcaatcccaatttattcaacttt |
32461372 |
T |
|
| Q |
218 |
tccatcattttctaggctattttttcccaagaaaattatgaggacaatgaatattttcatcttccctcttctcactattttgttcatggcaatttctcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461371 |
tccatcattttctaggctattttttcccaagaaaattatgaggacaatgaatattttcatcttccctcttctcactattttgttcatggcaatttctcac |
32461272 |
T |
|
| Q |
318 |
atgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtggtcg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461271 |
atgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtggtcg |
32461172 |
T |
|
| Q |
418 |
cgctggtgattacatacatgcttcattgatttttgtagaaggaaattccagaatatttttgtatatgtaattattattgatgaaatttagtattaataat |
517 |
Q |
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| T |
32461171 |
cgctggtgattacatacatgcttcattgatttttgtagaaggaaactccagaatatttttgtatatgtaattattattgatgaaatttagtattaataat |
32461072 |
T |
|
| Q |
518 |
attcttttgatacactaattaccttcttgtgctttcaaaagttcttaagttcaactttacattcttttccaaacgcgtgagatttctaggtcaaaagaaa |
617 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461071 |
attcttttgatacattaatttccttcttgtgctttcaaaagttcataagttcaactttacattcttttccaaacgcgtgagatttctaggtcaaaagaaa |
32460972 |
T |
|
| Q |
618 |
acgtgtaaattttagctaaagtttctatattaatgtcacgttatcgat |
665 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
32460971 |
acgtgtaaatcttagctaaagtttctatatgaatgtcacgttatcgat |
32460924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 206 - 524
Target Start/End: Complemental strand, 32456888 - 32456556
Alignment:
| Q |
206 |
ttattcaacttttccatcattttctaggctattttttcccaagaaaattatgaggacaatgaatattttcatcttccctcttctcactattttgttcatg |
305 |
Q |
| |
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|||||||| ||| |||||| |||||| | |||||| ||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||| |
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| T |
32456888 |
ttattcaaaattttcatcatcttctagcttctttttttccaagaaaattatgaagacaatgaacattttcatcttcccactactcactattttgttcatg |
32456789 |
T |
|
| Q |
306 |
gcaatttctcacatgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctc |
405 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
32456788 |
gcaatttctcacatgggtcatgctcagaattttgatatttctccagcacctactcctactagtgatgctcagattctggatcaaggaattgcttattctc |
32456689 |
T |
|
| Q |
406 |
ttatggtggtcgcgctggtgattacatacatgcttcattg---------------atttttgtagaaggaaattccagaatatttttgtatatgtaatta |
490 |
Q |
| |
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||||| |||| |||||||| |||||||||||| ||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32456688 |
ttatgttggtagcgctggttattacatacatgtttcattgatattttttctattaattttagtagaaggaaatttcag-atatttttgtatatgtaatta |
32456590 |
T |
|
| Q |
491 |
ttattgatgaaatttagtattaataatattcttt |
524 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
32456589 |
ttattgatgaaatttagtgttaataatattcttt |
32456556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 238 - 451
Target Start/End: Complemental strand, 32440241 - 32440028
Alignment:
| Q |
238 |
tttttcccaagaaaattatgaggacaatgaatattttcatcttccctcttctcactattttgttcatggcaatttctcacatgggtcatgctcaaaattt |
337 |
Q |
| |
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||||| || ||||||| |||| |||||||||||| ||||||||||| |||| | |||||||||||||| ||||||||| |||||||||||| ||| ||| |
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| T |
32440241 |
ttttttcctagaaaataatgaagacaatgaatatattcatcttcccaattctaagtattttgttcatgggaatttctcatatgggtcatgctaaaatttt |
32440142 |
T |
|
| Q |
338 |
tgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtggtcgcgctggtgattacatacatg |
437 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| || ||||||| | || |||||||| |||||||||||| |
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| T |
32440141 |
tgatatttctccagcacctactcctaccggtggtgctcagattctggatcaagtaattgcttgttttcttatgttagtggcgctggtcattacatacatg |
32440042 |
T |
|
| Q |
438 |
cttcattgattttt |
451 |
Q |
| |
|
|| ||||||||||| |
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| T |
32440041 |
ctccattgattttt |
32440028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 300 - 449
Target Start/End: Complemental strand, 32463971 - 32463822
Alignment:
| Q |
300 |
ttcatggcaatttctcacatgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgctt |
399 |
Q |
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||||||||||| ||||| ||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
32463971 |
ttcatggcaatctctcatttgggtcaagctcaaggttttgatatgtctccagcaccttctcctacaagtgatgctcagattcttgatcaaggaattgctt |
32463872 |
T |
|
| Q |
400 |
attctcttatggtggtcgcgctggtgattacatacatgcttcattgattt |
449 |
Q |
| |
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| | ||||||| |||| ||| ||||||||||||||||| | ||||||||| |
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| T |
32463871 |
actttcttatgttggtggcgttggtgattacatacatgttccattgattt |
32463822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 32457044 - 32456985
Alignment:
| Q |
88 |
tttcattgaaatttctaagacgccacattttactcctccttctttctctacctataaatac |
148 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32457044 |
tttccttgaaatttcttagacgccacattttact-ttccttctttctctacctataaatac |
32456985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 32440405 - 32440347
Alignment:
| Q |
98 |
atttctaagacgccacattttactcctccttctttctctacctataaatactagtacca |
156 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
32440405 |
atttataagacgccactaattactcctccttctttccctacctataaatactagcacca |
32440347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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