View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_62 (Length: 329)
Name: NF2071_low_62
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_62 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 26799177 - 26799484
Alignment:
| Q |
19 |
ggacgaaagattttaatttcaatgggttaaaaaagaaaagttttgtatagcataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgat |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26799177 |
ggacgaaagattttaattgcaatgggttaaaaaagaaaagttttgtatagcataccttgatggttgggtcagtggaatcatcaagaatttgtatgatgat |
26799276 |
T |
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| Q |
119 |
tctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataaacctgcattttgaacaacacatatgtgtatgtattaatgagagaagaa |
218 |
Q |
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| T |
26799277 |
tctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataaacctgcaatttgaacaacacatatgtgtatgtattaatgag---agaa |
26799373 |
T |
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| Q |
219 |
agttgtgcttttaaaagttgactttaaaaggaaaaagtcatcattaaaaattcacctctctttcattgtacattgggatctggacaagaaccatgggata |
318 |
Q |
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||||||| ||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
26799374 |
agttgtggttttaaaagctgactttaaaagtaaaaagtcaacattgaaaattcacctctctttcattgtacattggaacttgaacaagaaccatgggata |
26799473 |
T |
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| Q |
319 |
attggagtttc |
329 |
Q |
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||| ||||||| |
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| T |
26799474 |
attagagtttc |
26799484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 70 - 329
Target Start/End: Original strand, 26823319 - 26823576
Alignment:
| Q |
70 |
ataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata |
169 |
Q |
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| T |
26823319 |
ataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgataactgata |
26823418 |
T |
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| Q |
170 |
aacctgcattttgaacaacacatatgtgtatgtattaatgagagaagaaagttgtgcttttaaaagttgactttaaaaggaaaaagtcatcattaaaaat |
269 |
Q |
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| T |
26823419 |
aacctgcaatatgaacaacacacatgt--atgtattaatgagagaagaaagttgtgcttttaaaagttgactttaaaatgaaaaagtcaacattaaaaat |
26823516 |
T |
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| Q |
270 |
tcacctctctttcattgtacattgggatctggacaagaaccatgggataattggagtttc |
329 |
Q |
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| T |
26823517 |
tcacctctctttcattgtacattgggatctggacaagaaccatgggataataggagtttc |
26823576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 26786446 - 26786561
Alignment:
| Q |
70 |
ataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata |
169 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786446 |
ataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata |
26786545 |
T |
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| Q |
170 |
aacctgcattttgaac |
185 |
Q |
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| T |
26786546 |
aacctacatttagaac |
26786561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 26833234 - 26833351
Alignment:
| Q |
70 |
ataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata |
169 |
Q |
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||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||| |
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| T |
26833234 |
ataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgata |
26833333 |
T |
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| Q |
170 |
aacctgcattttgaacaa |
187 |
Q |
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|||||||||||||||||| |
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| T |
26833334 |
aacctgcattttgaacaa |
26833351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 26786644 - 26786707
Alignment:
| Q |
265 |
aaaattcacctctctttcattgtacattgggatctggacaagaaccatgggataattggagttt |
328 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||| || || ||||| |||||| |
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| T |
26786644 |
aaaattcacctctctttcattgtacattgggatttgaacaagaacaatagggtaattagagttt |
26786707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 26833429 - 26833497
Alignment:
| Q |
261 |
attaaaaattcacctctctttcattgtacattgggatctggacaagaaccatgggataattggagtttc |
329 |
Q |
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| T |
26833429 |
attgaaaattcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttc |
26833497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 41917095 - 41916992
Alignment:
| Q |
71 |
taccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataa |
170 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| || || |||||||||| |||||||| | |||||| |
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| T |
41917095 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
41916996 |
T |
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| Q |
171 |
acct |
174 |
Q |
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|||| |
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| T |
41916995 |
acct |
41916992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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