View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_71 (Length: 298)
Name: NF2071_low_71
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 45281729 - 45281993
Alignment:
| Q |
19 |
gtcttcgagccatgcatcacattcacactcgctgagtgttacatgtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaacc |
118 |
Q |
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| T |
45281729 |
gtctccgacccatgcatcacattcacactcgctgagtgttacatgtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaacc |
45281828 |
T |
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| Q |
119 |
attcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45281829 |
attcagctgcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgac |
45281928 |
T |
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| Q |
219 |
cctcctagcaacattggcaccaggtccagtgttggcatactctgcatagtaacatgtgttgtgat |
283 |
Q |
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| T |
45281929 |
cctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgttgtgat |
45281993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 63 - 283
Target Start/End: Original strand, 45273529 - 45273749
Alignment:
| Q |
63 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagct |
162 |
Q |
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| T |
45273529 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggtccagcttggagccatataccagct |
45273628 |
T |
|
| Q |
163 |
gtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgttggcatactctg |
262 |
Q |
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| T |
45273629 |
gtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctg |
45273728 |
T |
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| Q |
263 |
catagtaacatgtgttgtgat |
283 |
Q |
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||||||||||||||||||||| |
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| T |
45273729 |
catagtaacatgtgttgtgat |
45273749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 45293077 - 45293328
Alignment:
| Q |
27 |
gccatgcatcacattcacactcgctgagtgttacatgtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagct |
126 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||||||| ||| |
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| T |
45293077 |
gccatgcatcacattcacactctctcagagttacatgtttaattttcaagctttgaagccaaggtaattaggaacattaagaccagtcaaccattcggct |
45293176 |
T |
|
| Q |
127 |
gcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctag |
226 |
Q |
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|| ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| | |
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| T |
45293177 |
gcggacttgggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctgg |
45293276 |
T |
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| Q |
227 |
caacattggcaccaggtccagtgttggcatactctgcatagtaacatgtgtt |
278 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45293277 |
caatattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgtt |
45293328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 45302037 - 45302288
Alignment:
| Q |
27 |
gccatgcatcacattcacactcgctgagtgttacatgtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagct |
126 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||||||| ||| |
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| T |
45302037 |
gccatgcatcacattcacactctctcagagttacatgtttaattttcaagctttgaagccaaggtaattaggaacattaagaccagtcaaccattcggct |
45302136 |
T |
|
| Q |
127 |
gcagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctag |
226 |
Q |
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|| ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| | |
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| T |
45302137 |
gcggacttgggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctgg |
45302236 |
T |
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| Q |
227 |
caacattggcaccaggtccagtgttggcatactctgcatagtaacatgtgtt |
278 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45302237 |
caatattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgtt |
45302288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 63 - 278
Target Start/End: Original strand, 45269967 - 45270194
Alignment:
| Q |
63 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagc |
150 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | |||| |
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| T |
45269967 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagc |
45270066 |
T |
|
| Q |
151 |
catataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgt |
250 |
Q |
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||||||| || ||| ||||| |||||||| ||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45270067 |
catatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgt |
45270166 |
T |
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| Q |
251 |
tggcatactctgcatagtaacatgtgtt |
278 |
Q |
| |
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|||||||||||||| ||||||| ||||| |
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| T |
45270167 |
tggcatactctgcaaagtaacacgtgtt |
45270194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 45273391 - 45273433
Alignment:
| Q |
19 |
gtcttcgagccatgcatcacattcacactcgctgagtgttaca |
61 |
Q |
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| T |
45273391 |
gtctccgagccatgcatcacattcacactctctgagagttaca |
45273433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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