View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_low_73 (Length: 278)
Name: NF2071_low_73
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_73 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 51857890 - 51858133
Alignment:
| Q |
22 |
attcaatgttatgcaaaaaatatctcgtggattcctcataaatataaattatcnnnnnnn-gaaaagaatgggcagagtagcagcaggaacagatgcgga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51857890 |
attcaatgttatgcaaaaaatatctcgtggattcttcataaatataaattatcaaaaaaaagaaaagaatgggcagagtagcagcaggaacagatgcgga |
51857989 |
T |
|
| Q |
121 |
gacttgaagaaagagtgtgtgatgatagatgatgacacggttgactggctaaatcttactcgagagttatggttagttactatatcc-nnnnnnntcttc |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
51857990 |
gacttgaagaaagtgtgtgtgatgatagatgatgacacggttgattggctaaatcttcctcgagacttatggttagttattatatccaaaaaaaaatttc |
51858089 |
T |
|
| Q |
220 |
gattccgtagtgtctgtgctttatggcgctctattctttcccct |
263 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51858090 |
gattccgtagtgcctgtgctttatggcgctctattctttcccct |
51858133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 34865605 - 34865479
Alignment:
| Q |
82 |
gaaaagaatgggcagagtagcagcaggaacagatg-cggagacttgaagaaagagtgtgtgatgatagatgatgacacggttgactggctaaatcttact |
180 |
Q |
| |
|
|||||||| ||||||||| |||||||| || | || |||||||||||||||| ||||||||||||| ||||||||| | |||||||||||||||||| || |
|
|
| T |
34865605 |
gaaaagaacgggcagagtggcagcagggactggtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcct |
34865506 |
T |
|
| Q |
181 |
cgagagttatggttagttactatatcc |
207 |
Q |
| |
|
||||| ||||||||||||| ||||||| |
|
|
| T |
34865505 |
cgagaattatggttagttattatatcc |
34865479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 34865455 - 34865407
Alignment:
| Q |
215 |
tcttcgattccgtagtgtctgtgctttatggcgctctattctttcccct |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
34865455 |
tcttcgattccgtagtgtctgtgctttattgcgctctattcttccccct |
34865407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14839 times since January 2019
Visitors: 8422