View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_8 (Length: 709)
Name: NF2071_low_8
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 16 - 695
Target Start/End: Original strand, 41876312 - 41876994
Alignment:
| Q |
16 |
cattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41876312 |
cattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggataat |
41876411 |
T |
|
| Q |
116 |
aacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaaaataaaatattttgcaataaatttttgtggtct |
215 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41876412 |
aacattgcctgaggtcaataccatagcagatgggctccgagcatgtctcggaaattttacatggtaaaatcaaatattttgcaataaatttttgtggtct |
41876511 |
T |
|
| Q |
216 |
tacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876512 |
tacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatg |
41876611 |
T |
|
| Q |
316 |
aaactatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaatgatgcttgga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876612 |
aaactatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaatgatgcttgga |
41876711 |
T |
|
| Q |
416 |
aggatagcaagcatattggaatagtaatttcaggtggcaatgttgatatggcagtgctttggaattatttgaacaaatcaaaatgacttttcgttattat |
515 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876712 |
aggatagcaagcatataggaatagtaatttcaggtggcaatgttgatatggcagtgctttggaattatttgaacaaatcaaaatgacttttcgttattat |
41876811 |
T |
|
| Q |
516 |
tcaattactgatgtaaaagtttgtgtggat---tatctcaatgctactagcatttattaatatgaaataaaaagtatttgaattaatccaaaatttataa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||| ||||||||||||| | ||||||||| |
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| T |
41876812 |
tcaattactgatgtaaaagtttgtgtggattaatatctcaatgctactagcatttactaatttaaaataaaatatatttgaattaattcgaaatttatac |
41876911 |
T |
|
| Q |
613 |
aacttgagtattttacatacaatttatttgaatttataaataacattttattgtaatttaaacggtaccaaacggcacaggtt |
695 |
Q |
| |
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| T |
41876912 |
aacttgagtattttacataccatttatttgaatttacaaataatattttattgtaatttaaacggcaccaaacggcacaggtt |
41876994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 246 - 507
Target Start/End: Complemental strand, 40867503 - 40867242
Alignment:
| Q |
246 |
caggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgtt |
345 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| |||| ||||||||| ||||||||| |
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| T |
40867503 |
caggcctgtcgtacgagatcttgttgacgacataataactgtggaagacagtgaaattgttaaagccatgcaactgtgttatgaaattcttaagattgtt |
40867404 |
T |
|
| Q |
346 |
gttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaatgatgcttggaaggatagcaagcatattggaatagtaattt |
445 |
Q |
| |
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|| ||||||||||||||||| |||||||| ||||| |||| || |||||||||||||| ||||||||| ||| |||||||||| ||||||||| | | |
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| T |
40867403 |
gtagaaccaagtggagcaattggccttgcagctgttctatccgaatcttttcagaaaaatcctgcttggaaagattgcaagcatataggaatagtagtgt |
40867304 |
T |
|
| Q |
446 |
caggtggcaatgttgatatggcagtgctttggaattatttgaacaaatcaaaatgacttttc |
507 |
Q |
| |
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||||||| |||||||||||||| ||||||||| ||| | ||||||||| ||| ||||||||| |
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| T |
40867303 |
caggtggaaatgttgatatggccgtgctttgggattctctgaacaaatgaaattgacttttc |
40867242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 40867754 - 40867588
Alignment:
| Q |
16 |
cattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataat |
115 |
Q |
| |
|
|||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| | ||||| ||||| ||||||||||||||||| |||||||| |
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| T |
40867754 |
cattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatgacgcagcacaatctaaagcagctggaaggataat |
40867655 |
T |
|
| Q |
116 |
aacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaa |
182 |
Q |
| |
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|||| |||| ||| |||||| ||||| |||||||| ||||||| ||| ||| |||| ||||||||| |
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| T |
40867654 |
aacattgcccgagaccaatactatagctgacgggctacgagcatttcttggagatttcacatggtaa |
40867588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 24800456 - 24800358
Alignment:
| Q |
19 |
tagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataataa |
117 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| || |||||||||| |
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| T |
24800456 |
tagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggataataa |
24800358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 24817532 - 24817434
Alignment:
| Q |
19 |
tagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataataa |
117 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| || |||||||||| |
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|
| T |
24817532 |
tagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggataataa |
24817434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 218 - 405
Target Start/End: Complemental strand, 9735855 - 9735668
Alignment:
| Q |
218 |
cgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatgaa |
317 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||| |||||| |||||||||||| || ||||| || |||||||| |||||| | ||||| ||||| |
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|
| T |
9735855 |
cgattaatttgtcgagttttctgtgacacaggcctattgtacaagatcttgttgaagatataatcacagtggaagactttgaaatcatcaaagcaatgaa |
9735756 |
T |
|
| Q |
318 |
actatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaat |
405 |
Q |
| |
|
||| |||||| || || | ||||||||| | ||| || ||||||| ||||||| || ||| |||| ||||||||||||||||| |
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| T |
9735755 |
actgtgttttaaactttttaagattgttttagaatcatgtggagctgctggccttgttgttgtgctatctgaaacttttcagaaaaat |
9735668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 9736080 - 9735930
Alignment:
| Q |
19 |
tagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgat--gcagcgcaatctaaagcagctgggaggataata |
116 |
Q |
| |
|
|||||||||| || |||||| || ||||| | ||||||| |||||||| ||||||| ||||||| ||| |||||||||| || | ||||||||||| |
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|
| T |
9736080 |
tagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaagacaacaaggaggataata |
9735981 |
T |
|
| Q |
117 |
acactgcctgaggtcaataccatagcagacgggctccgagcatgtctcgga |
167 |
Q |
| |
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| | |||||||| | |||| ||||||||| |||| ||||||| ||||||| |
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|
| T |
9735980 |
aaattgcctgagataaatattatagcagacaggcttcgagcatttctcgga |
9735930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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