View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_86 (Length: 248)
Name: NF2071_low_86
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25277110 - 25276878
Alignment:
| Q |
1 |
aaacttgacaaggtgtataacaccattacacaaaggaacttatttgtttcaaaacaaaatataccaatttctgaaagttctagtcgcagcgtgtccacca |
100 |
Q |
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| T |
25277110 |
aaacttgacaaggtgtataacaccattacacaaaggaacttatttgtttcaaaacaaaatataccaatttttgaaagttctagtcgcagtgtgtccacca |
25277011 |
T |
|
| Q |
101 |
ttctccaatccacacatgggatctcaagaccttaggaaaatccatggatatccatgtcaagtacgagccttataatgccacaatttattcctcaatcaag |
200 |
Q |
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| T |
25277010 |
ttctccaatccacacatgggatctcaagaccttaggaaaatccatggatatccatgtcaagtacgagccttataatgccacaatttattcctcaatcaag |
25276911 |
T |
|
| Q |
201 |
gctagtaaacaatatgtctgacattaaccaatc |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25276910 |
gctagtaaacaatatgtctgacattaaccaatc |
25276878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 25274851 - 25275080
Alignment:
| Q |
1 |
aaacttgacaaggtgtataacaccattac-acaaaggaacttatttgtttcaaaacaaaatataccaatttctgaaagttctagtcgcagcgtgtccacc |
99 |
Q |
| |
|
|||||| |||| |||||||||| || || |||||||||||| | |||||||||| |||||||| ||||||||| |||||||| ||||| |||||| | |
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| T |
25274851 |
aaactttacaatgtgtataacatcaataagacaaaggaacttttctgtttcaaaataaaatataacaatttctgtaagttctaaccgcagtgtgtccttc |
25274950 |
T |
|
| Q |
100 |
attctccaatccacacatgggatctcaagaccttaggaaaatccatggatatccatgtcaagtacgagccttataatgccacaatttattcctcaatcaa |
199 |
Q |
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| T |
25274951 |
tatgtccaacccacacaagtgatctcaagacctataaaaaatccaggagaatccatgtcaagtaagagccttagaatgccaaaatttattcctcaatcaa |
25275050 |
T |
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| Q |
200 |
ggctagtaaacaatatgtctgacattaacc |
229 |
Q |
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|||| | ||| ||||||||| |||||||| |
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| T |
25275051 |
ggctcgaaaaaaatatgtctagcattaacc |
25275080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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