View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_90 (Length: 245)

Name: NF2071_low_90
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_90
NF2071_low_90
[»] chr5 (7 HSPs)
chr5 (140-244)||(42329791-42329892)
chr5 (11-86)||(42329711-42329785)
chr5 (9-46)||(17674160-17674197)
chr5 (10-43)||(4011800-4011833)
chr5 (10-47)||(26660962-26660999)
chr5 (10-47)||(26932555-26932592)
chr5 (10-43)||(27600602-27600635)
[»] chr7 (4 HSPs)
chr7 (10-50)||(12977850-12977890)
chr7 (10-49)||(35778454-35778493)
chr7 (10-43)||(17869192-17869225)
chr7 (10-47)||(45933495-45933532)
[»] chr8 (2 HSPs)
chr8 (10-45)||(11165480-11165515)
chr8 (11-43)||(7612452-7612484)
[»] scaffold0078 (1 HSPs)
scaffold0078 (9-43)||(1360-1394)
[»] chr3 (1 HSPs)
chr3 (10-50)||(42791275-42791315)
[»] chr1 (4 HSPs)
chr1 (10-42)||(672432-672464)
chr1 (10-46)||(17919986-17920022)
chr1 (10-46)||(43929635-43929671)
chr1 (10-50)||(50158223-50158263)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 42329791 - 42329892
Alignment:
Q  140 gttgattatcctatggaatagattggaggagtctttcctatcaattatcatgattaacatttccaataatatggttttctaaaattataaccagccctat 239  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  42329791 gttgattatcctatggaataggttggaggagtctttcctatcaatgat---gattaacatttccaataatatggttttctaaaattataatcagccttat 42329887  T
Q  240 gctac 244  Q
    |||||    
T  42329888 gctac 42329892  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 42329711 - 42329785
Alignment:
Q  11 taaagtgacactcattttaaaaaggagggagtattaaattagagccaacactatcagatggttaaaataattaagt 86  Q
    |||||||||||||||||||||||  |  |||||||||||||||||||||||||||   ||||||||||| ||||||    
T  42329711 taaagtgacactcattttaaaaaa-atagagtattaaattagagccaacactatccattggttaaaatacttaagt 42329785  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 17674197 - 17674160
Alignment:
Q  9 actaaagtgacactcattttaaaaaggagggagtatta 46  Q
    |||||||||||||||||||||||| |||||||||||||    
T  17674197 actaaagtgacactcattttaaaacggagggagtatta 17674160  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 4011800 - 4011833
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagta 43  Q
    ||||||||||||||||||| ||||||||||||||    
T  4011800 ctaaagtgacactcattttgaaaaggagggagta 4011833  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 26660962 - 26660999
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaa 47  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  26660962 ctaaagcgacactcattttaaaacggagggagtattaa 26660999  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 26932555 - 26932592
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaa 47  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  26932555 ctaaagcgacactcattttaaaacggagggagtattaa 26932592  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 27600602 - 27600635
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagta 43  Q
    ||||||||||||||||||||||| ||||||||||    
T  27600602 ctaaagtgacactcattttaaaatggagggagta 27600635  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 12977850 - 12977890
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaaatt 50  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  12977850 ctaaagcgacactcattttaaaaaggagggagtagtaaatt 12977890  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 35778493 - 35778454
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaaat 49  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  35778493 ctaaagtgacactcattttaaaatggagggagtagtaaat 35778454  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 17869225 - 17869192
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagta 43  Q
    ||||||||||||||||||||||| ||||||||||    
T  17869225 ctaaagtgacactcattttaaaacggagggagta 17869192  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 45933532 - 45933495
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaa 47  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  45933532 ctaaagcgacactcattttaaaacggagggagtattaa 45933495  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 11165515 - 11165480
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtatt 45  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11165515 ctaaagtgacactcattttaaaacggagggagtatt 11165480  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 7612484 - 7612452
Alignment:
Q  11 taaagtgacactcattttaaaaaggagggagta 43  Q
    |||||||||||||||||||||| ||||||||||    
T  7612484 taaagtgacactcattttaaaagggagggagta 7612452  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 1394 - 1360
Alignment:
Q  9 actaaagtgacactcattttaaaaaggagggagta 43  Q
    ||||||||||||||||||||||||||||| |||||    
T  1394 actaaagtgacactcattttaaaaaggagagagta 1360  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 42791315 - 42791275
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaaatt 50  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  42791315 ctaaagtgacactcattttgaaacggagggagtactaaatt 42791275  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 672432 - 672464
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagt 42  Q
    ||||||||||||||||||||||| |||||||||    
T  672432 ctaaagtgacactcattttaaaacggagggagt 672464  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 17919986 - 17920022
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtatta 46  Q
    |||||| |||||||||||||||| |||||||||||||    
T  17919986 ctaaagcgacactcattttaaaacggagggagtatta 17920022  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 43929671 - 43929635
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtatta 46  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  43929671 ctaaagtgacactcattttgaaacggagggagtatta 43929635  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 50158263 - 50158223
Alignment:
Q  10 ctaaagtgacactcattttaaaaaggagggagtattaaatt 50  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  50158263 ctaaagtgacactcattttgaaacggagggagtaataaatt 50158223  T

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