View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2100-Insertion-4 (Length: 791)
Name: NF2100-Insertion-4
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100-Insertion-4 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 49 - 791
Target Start/End: Complemental strand, 165113 - 164371
Alignment:
| Q |
49 |
ctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
165113 |
ctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
165014 |
T |
|
| Q |
149 |
agcatacataaaaccttataaatatataaatgttaatggaatatttgaatcaattcaccttttcaatggaaaactaaaatgctaatcccactccagttga |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
165013 |
agcatacataaaaccttataaatatataaatgttaatggaatatttgaatcaattcaccttttcaacggaaaactaaaaagctaatcccactccagttga |
164914 |
T |
|
| Q |
249 |
tgcatacagttaaatgatcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164913 |
tgcatacagttaaatgatcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggat |
164814 |
T |
|
| Q |
349 |
gtgcttcattgtaacttcaagggctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatc |
448 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164813 |
gtgcttcattgtaacttcaagagctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatc |
164714 |
T |
|
| Q |
449 |
agatcttgtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacaca |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164713 |
agatcttgtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacaca |
164614 |
T |
|
| Q |
549 |
ttgtgataaattaaagataaagattctaacctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctc |
648 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164613 |
ttgtgatcaattaaagataaagactctaacctttgcacataggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctc |
164514 |
T |
|
| Q |
649 |
aactgtaagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctg |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164513 |
aactgtaagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctg |
164414 |
T |
|
| Q |
749 |
taaaaaaccaaggtgaaaatcagatagaataaactctcgattc |
791 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
164413 |
taaaaaacaaaggtgaaaatcagatagaataaactctcgattc |
164371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 49 - 748
Target Start/End: Complemental strand, 104136 - 103448
Alignment:
| Q |
49 |
ctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104136 |
ctgcatggtcattccatcttctgacatccacaagtaatcttggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
104037 |
T |
|
| Q |
149 |
agcatacataaaaccttataaatat--ataaatgttaatggaatatttgaatcaattcaccttttcaatggaaaactaaaatgctaatcccactccagtt |
246 |
Q |
| |
|
||||||||||| |||| |||||||| ||| |||| |||| ||||| |||| || ||||| | |||||| | ||| |||| |
|
|
| T |
104036 |
agcatacataatacctgataaatatatatacatgtaaatgacatattcgaatgaa-------------------actaagaagctaattcaacttcagtc |
103956 |
T |
|
| Q |
247 |
gatgcatacagttaaatgatcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtgg |
346 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
103955 |
gatgcataccgctaaataatcaatatgcttaattgctatgctacttaccttttccacacacccaatggttaggtatcgactgttctcatcctcgtagtgg |
103856 |
T |
|
| Q |
347 |
atgtgcttcattgtaacttcaagggctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccata |
446 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
103855 |
atatgcttcattgtaacttcaagggctctttttctgaccagcttgttgaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccata |
103756 |
T |
|
| Q |
447 |
tcagatcttgtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcct------atgttaaaaaggatgtgtaat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||| |||| |||| |||||| |
|
|
| T |
103755 |
tcagatcttgtatcaaaggatggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaa |
103656 |
T |
|
| Q |
541 |
ttcacacattgtgataaattaaagataaagattctaacctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagtt |
640 |
Q |
| |
|
| |||||||||| | ||||||||| || || ||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||| || |||||||||| |
|
|
| T |
103655 |
tccacacattgtaaacaattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagtt |
103556 |
T |
|
| Q |
641 |
cttctctcaactgtaagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacat |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
103555 |
cttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataacaccacat |
103456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 165157 - 165128
Alignment:
| Q |
7 |
atatattccataagtaatagaagtattaat |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
165157 |
atatattccataagtaatagaagtattaat |
165128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 205; Significance: 1e-111; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 266 - 776
Target Start/End: Original strand, 92372 - 92882
Alignment:
| Q |
266 |
tcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaactt |
365 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
92372 |
tcaatatgcttaattgttatactaaataccttttccacacatgcaacagttatgtatcgactattctcatcctcgtagtgaatatgcttcattgctactt |
92471 |
T |
|
| Q |
366 |
caagggctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaagg |
465 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||||||||| ||||| ||||| || || | ||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
92472 |
gtagggctttttctctgaccaacttgttgaaaggccaacgagttagaagtggctcagtaaaaaggtaaaagctatcccatattaaatcttgtatcaaagg |
92571 |
T |
|
| Q |
466 |
atggggatagtaaagatcttcct-atgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgataaattaaag |
564 |
Q |
| |
|
||| |||||||| | |||||||| |||| ||||||||||| ||||||||||| || |||||| | ||||||||| |||| ||| ||| || ||||| || |
|
|
| T |
92572 |
atgaggatagtagatatcttcctgttgag-cataaaatggaacattatccctcatacgttaaaga-gatgtgtaaattcatacactgtcatgaattagag |
92669 |
T |
|
| Q |
565 |
ataaagattctaacctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtg |
664 |
Q |
| |
|
| ||||| || |||||||||||||||||||||| ||| |||| ||| ||| |||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
92670 |
acaaagagcctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagacgagtg |
92769 |
T |
|
| Q |
665 |
gtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaa-aaaaccaaggtg |
763 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| | |||||||| |||||||||||||||| || |||| || || |
|
|
| T |
92770 |
gtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacattttagctgaaattaaacttagatg |
92869 |
T |
|
| Q |
764 |
aaaatcagataga |
776 |
Q |
| |
|
||||||||||||| |
|
|
| T |
92870 |
aaaatcagataga |
92882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 92131 - 92265
Alignment:
| Q |
49 |
ctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
148 |
Q |
| |
|
||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| || ||| |||||||||||||||||||||| |||||||| ||| |
|
|
| T |
92131 |
ctgcatggtcattccatcttcggaaatccataaataatcggggacccttgcaagatgttttttgaaagcatctccatttggatcttcaacccaacaggca |
92230 |
T |
|
| Q |
149 |
agcatacataaaaccttataaatatataaatgtta |
183 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
92231 |
agcatacataaagcctgataaatatatacatgtta |
92265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 6e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 290 - 523
Target Start/End: Complemental strand, 13052815 - 13052576
Alignment:
| Q |
290 |
cttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagct |
389 |
Q |
| |
|
||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||| ||| ||| | || | |
|
|
| T |
13052815 |
cttaccttttctacagcccccatggttatgtatcgactattctcatcctcgtagtggatatgcttcattcttacttgaagggctttttctctaatcaatt |
13052716 |
T |
|
| Q |
390 |
tgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcc-- |
487 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13052715 |
tgttgaaaggccaacgagtgagaagtggctcggtgaatatatagaagctatcccatatcagatcttgtatcaaaggatgaggatagtaaagatcttcctg |
13052616 |
T |
|
| Q |
488 |
tatga---gacataaaatggatca-ttatccctcctatgt |
523 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
13052615 |
tatgagacgacataaaatggatcatttatccctcctatgt |
13052576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 13053026 - 13052846
Alignment:
| Q |
49 |
ctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
148 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13053026 |
ctgcatggtcattccatcttctgaaacccacaagtaatctgggacccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagca |
13052927 |
T |
|
| Q |
149 |
agcatacataaaaccttataaatatataaatgt---taatggaatatttgaatcaattcaccttttcaatggaaaactaaa |
226 |
Q |
| |
|
|||||||||||| ||| |||| |||||| |||| |||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
13052926 |
agcatacataaagcctgataactatatacatgttaataatggaatatttgaaatgattttatttttcaatggaaaactaaa |
13052846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 577 - 744
Target Start/End: Complemental strand, 13052544 - 13052377
Alignment:
| Q |
577 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
676 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| | |||||| |||||||| |||| | ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13052544 |
acctttgcacattggtgacgtgatttgaaccaatcaactttttcgtaaggttgattatgaatttcttctctcaactgtaagatgagtggtgtgattcgac |
13052445 |
T |
|
| Q |
677 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacatttta |
744 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
13052444 |
ccacaaacctcttcccgtacaagtaagacataggcatgtatgtcaatcgacaataacaccacatttta |
13052377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 289 - 748
Target Start/End: Original strand, 12137390 - 12137849
Alignment:
| Q |
289 |
acttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagc |
388 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||| ||| ||| | || | |
|
|
| T |
12137390 |
acttaccttttccacgcatccaatggttatgtatcgactattctcatcttcatagtggatatgcttcattgttacttgaagggctttttctctaatcaac |
12137489 |
T |
|
| Q |
389 |
ttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
488 |
Q |
| |
|
|||||||||||||||||||| |||| || || ||||||||||||| |||||||| || |||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
12137490 |
ttgttgaaaggccaacgagttagaattggttcaatgaatatgtataaactatcccacataagatcttgtacaaatggatgaggatagtaaaggtcttcct |
12137589 |
T |
|
| Q |
489 |
atgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgataaattaaagataaagat-tctaacctttgcaca |
587 |
Q |
| |
|
||| | ||| | | | ||||||||||| |||| || ||||| || ||| | |||| | ||||| | | | ||| || || ||||| ||||| |
|
|
| T |
12137590 |
gtgatatatacgacgcactgttatccctcctttgtt-aagaggatacatatattcccgcattataataaagttattaaaaacatctcccaccttcgcaca |
12137688 |
T |
|
| Q |
588 |
taggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacctacaaacctc |
687 |
Q |
| |
|
|||| |||| ||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| ||| |
|
|
| T |
12137689 |
ctggtgacgtgcttttttccaattaacttttgcataaggttcagtatagagttcttctctcaactgtaagatgagcggtgtgattgaacccacaaatctc |
12137788 |
T |
|
| Q |
688 |
ttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctg |
748 |
Q |
| |
|
|| || |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
12137789 |
tttccatacaagtaagacataggcatgtataccaatcgacagtaacaccacattttagctg |
12137849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 12137131 - 12137238
Alignment:
| Q |
49 |
ctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagca |
148 |
Q |
| |
|
||||||||||||||| |||||||| | ||| |||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
12137131 |
ctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacccaacaagaa |
12137230 |
T |
|
| Q |
149 |
agcataca |
156 |
Q |
| |
|
|||||||| |
|
|
| T |
12137231 |
agcataca |
12137238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 3e-47; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 292 - 488
Target Start/End: Original strand, 5722196 - 5722392
Alignment:
| Q |
292 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttg |
391 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| || |||||||| || ||||||| |||| || ||| ||| ||| ||||||||| |
|
|
| T |
5722196 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
5722295 |
T |
|
| Q |
392 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
488 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5722296 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccataatagatcttgtatcaaaggatggggatagtaaagatcttcct |
5722392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 292 - 488
Target Start/End: Original strand, 5669932 - 5670128
Alignment:
| Q |
292 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttg |
391 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||| || |||||||| || ||||||| |||| || ||| ||| ||| ||||||||| |
|
|
| T |
5669932 |
taccttttccacacacccaatggttatgtatcgactattcttatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
5670031 |
T |
|
| Q |
392 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
488 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5670032 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcct |
5670128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 292 - 488
Target Start/End: Original strand, 5691809 - 5692005
Alignment:
| Q |
292 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttg |
391 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||| || |||||||| || ||||||| |||| || ||| ||| ||| | ||||||| |
|
|
| T |
5691809 |
taccttttccacacatccaatagttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaatcagcttg |
5691908 |
T |
|
| Q |
392 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
488 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5691909 |
tttaacggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatggggatagtaaagatcttcct |
5692005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 577 - 750
Target Start/End: Original strand, 5670360 - 5670533
Alignment:
| Q |
577 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
676 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| |||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
5670360 |
acctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctcaactttaagatgagtggtgttattggac |
5670459 |
T |
|
| Q |
677 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgta |
750 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| ||||| |||||||| |
|
|
| T |
5670460 |
cgacaaacctcttcccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgta |
5670533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 577 - 749
Target Start/End: Original strand, 5722474 - 5722646
Alignment:
| Q |
577 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
676 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||||| | ||||||||| |||| |
|
|
| T |
5722474 |
acctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaagatcaatggtgtgattggac |
5722573 |
T |
|
| Q |
677 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgt |
749 |
Q |
| |
|
| ||||||||||| || |||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||| |
|
|
| T |
5722574 |
cgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgt |
5722646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 577 - 749
Target Start/End: Original strand, 5692134 - 5692306
Alignment:
| Q |
577 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
676 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||| | | ||||||||| |||| |
|
|
| T |
5692134 |
acctttgcacatagatggcgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaaggtcaatggtgtgattggac |
5692233 |
T |
|
| Q |
677 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgt |
749 |
Q |
| |
|
| ||||||||||| || |||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||| |
|
|
| T |
5692234 |
cgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgt |
5692306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 5722009 - 5722123
Alignment:
| Q |
50 |
tgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagcaa |
149 |
Q |
| |
|
|||| ||||||||||||||| || ||||| || || ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5722009 |
tgcagggtcattccatcttcagaaatccataaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaagcaa |
5722108 |
T |
|
| Q |
150 |
gcatacataaaacct |
164 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
5722109 |
gcatgcacaaaacct |
5722123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 5669745 - 5669859
Alignment:
| Q |
50 |
tgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagcaa |
149 |
Q |
| |
|
|||| ||||||||||||||| || | ||| || || | ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5669745 |
tgcagggtcattccatcttcagaaacccataaatagtttgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaagcaa |
5669844 |
T |
|
| Q |
150 |
gcatacataaaacct |
164 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
5669845 |
gcatgcacaaaacct |
5669859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 5691621 - 5691735
Alignment:
| Q |
50 |
tgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagcaa |
149 |
Q |
| |
|
|||| ||||||||||||||| | | ||| || || ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
5691621 |
tgcagggtcattccatcttcagcaacccataaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaagaaa |
5691720 |
T |
|
| Q |
150 |
gcatacataaaacct |
164 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
5691721 |
gcatgcacaaaacct |
5691735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 712
Target Start/End: Original strand, 1941994 - 1942043
Alignment:
| Q |
663 |
tggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggca |
712 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||| |||| |||| |
|
|
| T |
1941994 |
tggtgtgattggaccaacaaacctctttccgtacaagtaacacattggca |
1942043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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