View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2100-Insertion-6 (Length: 538)
Name: NF2100-Insertion-6
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100-Insertion-6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Complemental strand, 15375498 - 15375024
Alignment:
| Q |
7 |
aaaatgttattgatattgttgagcgaaatgatgttgacactgagggactgattcagcagttatagaattctcctatacttgaaccggttcaaccattaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15375498 |
aaaatgttattgatattgttgagcgaaatgatgttgacactgagggactgattcagcagttatagaattctcctatacttgaaccggttcaaccattaag |
15375399 |
T |
|
| Q |
107 |
tgcaacagaggctgtgacatctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacatgcagcaacccccatatgcccag |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15375398 |
tgcagcagaggctgtgacatctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacatgcagcagcccccatatgcccag |
15375299 |
T |
|
| Q |
207 |
ttttgcagaaggacatcaatttgatacgacagatttttgcctccagagacggaggagcctacagaacaatttacgccttaacttactaagaggtagaaaa |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
15375298 |
ttttgtagaaggacatcaatttgatacgaca-aattttgcctccagagacggaggagcctttagaac-atttacgccttaacttactaagaggtagaaaa |
15375201 |
T |
|
| Q |
307 |
aagaactctatcaagtccactacaaaacctagtctaagggtgcaattactcctctggttcaatgaaggtcctctatcggactattagaggcttcgaagct |
406 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
15375200 |
aagaactctatcaagtccattacaaaacccagtctaagggtgcaattattcctctggctcaatgaaggtcctctatcggaatattagaggcttcgatgct |
15375101 |
T |
|
| Q |
407 |
tgtgctgata---agactagtcatggtcatgttattacatacattgttgatgggattatttacctatttttcttaag |
480 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15375100 |
tgtgctgataagcagactagtcatggtcatgttataacatacattgttgatgggattatttacctatttttcttaag |
15375024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 501 - 538
Target Start/End: Complemental strand, 15375019 - 15374982
Alignment:
| Q |
501 |
acatagccttccgaattttagattcccttcgttcccta |
538 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15375019 |
acatagccttctgaattttagattcccttcgttcccta |
15374982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 30709171 - 30709060
Alignment:
| Q |
291 |
actaagaggtagaaaaaagaactctatcaagtccactacaaaacctagtctaagggtgcaattactcctctggttcaatgaaggtcctctatcggactat |
390 |
Q |
| |
|
||||||| ||||||| || ||||||||| ||| |||||||||| ||||||||||| || ||||| || || |||||||||||| || | || ||| |
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|
| T |
30709171 |
actaagaagtagaaacaacaactctatcgagtttcctacaaaacccggtctaagggtgaaaatactcttccggctcaatgaaggtcttcgtttagaatat |
30709072 |
T |
|
| Q |
391 |
tagaggcttcga |
402 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30709071 |
tagaggcttcga |
30709060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 85 - 418
Target Start/End: Complemental strand, 28299522 - 28299189
Alignment:
| Q |
85 |
ttgaaccggttcaaccattaagtgcaacagaggctgtgacatctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacat |
184 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||| ||||| || ||||| || ||||||| ||||||||| ||||| | || |||||||| ||||| |
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|
| T |
28299522 |
ttgaatcggttcagcctctaagtgcaacaacggctgcgacatttcctgggagttccacaaccacatcctcacatgaaactgttccagatactcaaaacat |
28299423 |
T |
|
| Q |
185 |
gcagcaacc-cccatatgcccagttttgcagaaggacatcaatttgatacgacagatttttgcctccagagacggaggagcctacagaacaatttacgcc |
283 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||||||||| |||| || ||||||| ||||||| ||||||||||||| |||||||||| || |
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|
| T |
28299422 |
gcagcaaccgcccatatacccagttttgcagaaggatatcaatttgttacggca-atttttggatccagaggtggaggagcctacaaaacaatttacacc |
28299324 |
T |
|
| Q |
284 |
ttaacttactaagaggtagaaaaaagaactctatcaagtccactacaaaacctagtctaagggtgcaattactcctctggttcaatgaaggtcctctatc |
383 |
Q |
| |
|
||| ||| || || | ||||||||||||||||| ||| ||| ||||||| |||||||||| ||||||||||| |||||||||||| ||||| |
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|
| T |
28299323 |
ttattttagtatgaagcggaaaaaagaactctatcgagtttcctaaaaaacctgatctaagggtgtaattactcctcctactcaatgaaggtcttctatt |
28299224 |
T |
|
| Q |
384 |
ggactattagaggcttcgaagcttgtgctgataag |
418 |
Q |
| |
|
||| | |||||||||| || |||||| ||| |||| |
|
|
| T |
28299223 |
ggaattttagaggctttgatgcttgtactgttaag |
28299189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 85 - 418
Target Start/End: Original strand, 28512551 - 28512884
Alignment:
| Q |
85 |
ttgaaccggttcaaccattaagtgcaacagaggctgtgacatctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacat |
184 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||| ||||| || ||||| || ||||||| ||||||||| ||||| | || |||||||| ||||| |
|
|
| T |
28512551 |
ttgaatcggttcagcctctaagtgcaacaacggctgcgacatttcctgggagttccacaaccacatcctcacatgaaactgttccagatactcaaaacat |
28512650 |
T |
|
| Q |
185 |
gcagcaacc-cccatatgcccagttttgcagaaggacatcaatttgatacgacagatttttgcctccagagacggaggagcctacagaacaatttacgcc |
283 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||||||||| |||| || ||||||| ||||||| ||||||||||||| |||||||||| || |
|
|
| T |
28512651 |
gcagcaaccgcccatatacccagttttgcagaaggatatcaatttgttacggca-atttttggatccagaggtggaggagcctacaaaacaatttacacc |
28512749 |
T |
|
| Q |
284 |
ttaacttactaagaggtagaaaaaagaactctatcaagtccactacaaaacctagtctaagggtgcaattactcctctggttcaatgaaggtcctctatc |
383 |
Q |
| |
|
||| ||| || || | ||||||||||||||||| ||| ||| ||||||| |||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
28512750 |
ttattttagtatgaagcggaaaaaagaactctatcgagtttcctaaaaaacctgatctaagggtgtaattactcctcctactcaatgaaggtcttctatt |
28512849 |
T |
|
| Q |
384 |
ggactattagaggcttcgaagcttgtgctgataag |
418 |
Q |
| |
|
||| | |||||||||| || |||||| ||| |||| |
|
|
| T |
28512850 |
ggaattttagaggctttgatgcttgtactgttaag |
28512884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 420 - 529
Target Start/End: Complemental strand, 17906302 - 17906192
Alignment:
| Q |
420 |
ctagtcatggtcatgttattacatacattgt-tgatgggattatttacctatttttcttaagctggatttttacaaggacatacatagccttccgaattt |
518 |
Q |
| |
|
||||||||||||||||||||||| | |||| || |||||||||||| || |||| |||| || |||||||||| ||||| |||| | ||||||||||| |
|
|
| T |
17906302 |
ctagtcatggtcatgttattacaaatgttgtctggtgggattatttatctgttttacttaggcatgatttttacagggacaaacatggtcttccgaattt |
17906203 |
T |
|
| Q |
519 |
tagattccctt |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
17906202 |
tagattccctt |
17906192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 14164604 - 14164474
Alignment:
| Q |
270 |
gaacaatttacgccttaacttactaagaggtagaaaaaagaactctatcaagtccactacaaaacctagtctaagggtgcaattactcctctggttcaat |
369 |
Q |
| |
|
|||||| |||| ||||| || ||||| | | ||||||||||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| |
|
|
| T |
14164604 |
gaacaacttacaccttacctaactaaaaagcagaaaaaagaactatatcgagtgtcctacaaaatccggtctaaaggtgcaattactcctctttctcaat |
14164505 |
T |
|
| Q |
370 |
gaaggtcctctatcggactattagaggcttc |
400 |
Q |
| |
|
||||||| ||||| ||| ||||||| ||||| |
|
|
| T |
14164504 |
gaaggtcttctattggaatattagatgcttc |
14164474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 529
Target Start/End: Complemental strand, 33892802 - 33892692
Alignment:
| Q |
420 |
ctagtcatggtcatgttattacatacattgt-tgatgggattatttacctatttttcttaagctggatttttacaaggacatacatagccttccgaattt |
518 |
Q |
| |
|
||||| ||||||||||||||||| | |||| || ||| ||| ||||||||||||||||| || |||||||| | |||||||||| | |||| | |||| |
|
|
| T |
33892802 |
ctagttatggtcatgttattacaaatgttgtctggtggaattctttacctatttttcttaggcaagatttttagagggacatacatggtcttctgtattt |
33892703 |
T |
|
| Q |
519 |
tagattccctt |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
33892702 |
tagattccctt |
33892692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 14164427 - 14164354
Alignment:
| Q |
462 |
tttacctatttttcttaagctggatttttacaaggacatacatagccttccgaattttagattcccttcgttcc |
535 |
Q |
| |
|
||||||||||||| ||| || ||||||||||||||||||||| | || | ||||||||||||||||| ||||| |
|
|
| T |
14164427 |
tttacctattttttttaggcaggatttttacaaggacatacacggtctactgaattttagattcccttagttcc |
14164354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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