View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100-Insertion-7 (Length: 468)
Name: NF2100-Insertion-7
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 210 - 468
Target Start/End: Complemental strand, 37532125 - 37531870
Alignment:
| Q |
210 |
caatgatagttggggcttctattaaatttagaggtgataatagagagtttaaggctgcaaagatgtgctggaagccatggaggttcgaggtttgggcagg |
309 |
Q |
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| T |
37532125 |
caatgatagttggggcttctattaaatttagaggtgataatagagagtttaaggctgcaaagatgtgctggaagccatggaggttcgaggtttgggcagg |
37532026 |
T |
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| Q |
310 |
tgccatggggctgctcacgactcttcaatggcccaagagttttaatctcgatcggattgattatgtttgaagttgatacacaggttatggctcatagtat |
409 |
Q |
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| T |
37532025 |
tgccatggggctgctcacgactcttcaatggcccaagagttttaatctcgatcggattgattatgtttgaagttgatacacaggttatggctcatagtat |
37531926 |
T |
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| Q |
410 |
caaatctaataaacaagacctttccatatgtgtttggagtcatcattatttctaaatgt |
468 |
Q |
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| T |
37531925 |
caaatctaataaagaagacctttccatatgtgtttggag---tcattatttctaaatgt |
37531870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 37532408 - 37532200
Alignment:
| Q |
8 |
agtatgtattagtgatccactttgtacgatatgaaatacaaatatcgttgttgtgagttaaccattgatattgaagagaccacatatagttgtgaataac |
107 |
Q |
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| T |
37532408 |
agtatgtattagtgatccactttgtacgatatgaaatacaaatatcgttgttgtgagttaaccattgatattgaagagaccacatatagttgtgaataac |
37532309 |
T |
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| Q |
108 |
ata----tatataaatgagtgtacgtaatacaaatataatttgtttcaagtttttatatttattcttgagaatatatttcagatagtcgcaaattctcac |
203 |
Q |
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| T |
37532308 |
atacatatatataaatgagtgtacgtaatacaaatataatttgtttcaagtttttatatttattcttgagaatatatttcagatagtcgcaaattctcac |
37532209 |
T |
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| Q |
204 |
ctagtgcaa |
212 |
Q |
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| T |
37532208 |
ctagtgcaa |
37532200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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