View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100-Insertion-8 (Length: 238)
Name: NF2100-Insertion-8
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 32613471 - 32613272
Alignment:
| Q |
39 |
aaagagatagaattaagagcaaaccagttaaagcttgttttattcttccggtcgatgaatatgaggtatcagaagaatgtgagtcctttttaaagctttg |
138 |
Q |
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| T |
32613471 |
aaagagatagaattaagagcaaaccagtcaaagcttgttttattcttccggttgataaatatgaggtatcagaagaatgagagtcatttttaaaactttg |
32613372 |
T |
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| Q |
139 |
cttgccaacaataacacaggtcccccacacaactgtgagaagcaggatggatgatccagctaacaaaccaactccagtggaagcatactcttgtgcactc |
238 |
Q |
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| T |
32613371 |
cttgccaacaataacacaggtcccccacacaactgtgagaagcaggatggatgatccagctaataatccaactccagtggaagcatactcttgcgcactc |
32613272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 32632158 - 32631949
Alignment:
| Q |
29 |
ggatttaaataaagagatagaattaagagcaaaccagttaaagcttgttttattcttccggtcgatgaatatgaggtatcagaagaatgtgagtcctttt |
128 |
Q |
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||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||| ||||| ||| |
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| T |
32632158 |
ggatttaaacaaagagatagaatcaaaagcaaaccagtcaaagcttgttttattcttcctgttgatgaatttgaggtatcagaagaatgagagtcatttc |
32632059 |
T |
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| Q |
129 |
taaagctttgcttgccaacaataacacaggtcccccacacaactgtgagaagcaggatggatgatccagctaacaaaccaactccagtggaagcatactc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32632058 |
gtaagctttgcttgccaacaataacacaggtcccccacacaactgtgagaagcaagatggatgatccagctaacaatccaactccagtggaagcatactc |
32631959 |
T |
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| Q |
229 |
ttgtgcactc |
238 |
Q |
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|||||||||| |
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| T |
32631958 |
ttgtgcactc |
32631949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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