View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2100_high_3 (Length: 464)
Name: NF2100_high_3
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100_high_3 |
 | |
|
| [»] scaffold0208 (2 HSPs) |
| | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 70 - 438
Target Start/End: Complemental strand, 15375981 - 15375612
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15375981 |
ggagctgcataagatggatgtcaatacaatatattttaatggcaacattaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
15375882 |
T |
|
| Q |
170 |
agtatatggtgcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15375881 |
attatatgatgcaaaatcatgaaatccacttatgaggtaagaaatttgtctcttaagtgttaccacgaattctcataaagcaattgtctcatttggttta |
15375782 |
T |
|
| Q |
270 |
gagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaa |
369 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15375781 |
gagatagtattatggagagttgtggatttagtaagttcagtgggagtaaatttatatttttcaagtttaacgtgttaattatattttatttactcaacaa |
15375682 |
T |
|
| Q |
370 |
tgatatattagttatg-nnnnnnnnaatcaataaattttattaaaaactagaactctgctcaagacgaac |
438 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
15375681 |
tgatatattagttatgttgctttttaatcaacaaattttattaaaaaccagaaccctgttcaagacgaac |
15375612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 25383644 - 25383336
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
25383644 |
ggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgtcaattgatacaa |
25383545 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttacc-acgaattctcataaaacaattgtctcatttggt |
266 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||| ||||||| |
|
|
| T |
25383544 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttacccaaaaattctcataaagtaattgtcttatttggt |
25383445 |
T |
|
| Q |
267 |
ttagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaa |
366 |
Q |
| |
|
|| |||||| || |||||||| ||||||| |||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | |||| |
|
|
| T |
25383444 |
tttgagataatattatggagaattgtggacttagcaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaa |
25383347 |
T |
|
| Q |
367 |
caatgatatat |
377 |
Q |
| |
|
| ||||||||| |
|
|
| T |
25383346 |
cgatgatatat |
25383336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 74 - 377
Target Start/End: Original strand, 31056114 - 31056417
Alignment:
| Q |
74 |
ctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagta |
173 |
Q |
| |
|
||||||||||||||| |||||| ||| ||| |||||| || |||| ||| ||||| ||||||| | || ||||||| | ||||| ||||||||||| |
|
|
| T |
31056114 |
ctgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaactttgga-tcaattgatacaaagta |
31056212 |
T |
|
| Q |
174 |
tatggtgcaaaat--catgaaattcacttatgagttaagaaatttgtctctta-agtgttaccacgaattctcataaaacaattgtctcatttggtttag |
270 |
Q |
| |
|
||||| |||| |||||||| ||||||| ||||||||||||||| | || ||||||||||| ||||||||| || |||||||||||||| |||| | |
|
|
| T |
31056213 |
gatggtttaaaaaggcatgaaatccacttataagttaagaaatttgttttttttagtgttaccacaaattctcatgaagcaattgtctcatttagttttg |
31056312 |
T |
|
| Q |
271 |
agatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaat |
370 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||| ||||| || |
|
|
| T |
31056313 |
agataatattatggagaattgtggatttagtaagctcagtgggagaaaatttata--tttcaagtttaatgtgtaaattatattttatttagtcaacgat |
31056410 |
T |
|
| Q |
371 |
gatatat |
377 |
Q |
| |
|
||||||| |
|
|
| T |
31056411 |
gatatat |
31056417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 38145970 - 38145663
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
38145970 |
ggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattgatacaa |
38145871 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
| || | ||| ||| ||||||||| ||||||| |||||||||||||||||||| |||||| || |||||||||||| |||||||| ||||| || |
|
|
| T |
38145870 |
attaaacggtttgcatggtcatgaaatccacttataagttaagaaatttgtctctttagtgttggcaaaaattctcataaagtaattgtcttatttgctt |
38145771 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||| ||| ||||| |||||| |||| ||||||| |||||||| ||||||||| | ||||| |
|
|
| T |
38145770 |
ttgagataatattatggagaattgtggatttagcaagttcattggaagtaattttata--tttctagtttaatatgtcaattttattttattcaatcaac |
38145673 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
38145672 |
gatgatatat |
38145663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 50588910 - 50588946
Alignment:
| Q |
401 |
aaattttattaaaaactagaactctgctcaagacgaa |
437 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50588910 |
aaattttattaaaaactagatctctgctcaagacgaa |
50588946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 47295357 - 47295394
Alignment:
| Q |
401 |
aaattttattaaaaactagaactctgctcaagacgaac |
438 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
47295357 |
aaattttattaaaaactatatctctgctcaagacgaac |
47295394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 23341647 - 23341954
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23341647 |
ggagttgcataagatggatgtcaatatagtaatttttaatggcaacattaatgatacaatatggtgcaactaaagaaaacttttgtgtcaatagatacaa |
23341746 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|| | | ||| ||||| | ||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
23341747 |
aggagaaggtttgcaaactgatgaaatccacttataagttaagaaatttgtctctttagtattaccacaaattctcatgaaggaattgtctcatttggtt |
23341846 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || || ||||||| || |||||||||| ||||||||||||||||||| |||| ||||| | ||||| ||| ||||||||||| ||||| |
|
|
| T |
23341847 |
ttgagataatataatagagagttttgaatttagtaagttcagtgggagtaaatttatgtttt--gagttttatgtgtcgattttattttatttagtcaac |
23341944 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
|||||||||| |
|
|
| T |
23341945 |
aatgatatat |
23341954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 13460091 - 13460399
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
13460091 |
ggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgtcaattgatacaa |
13460190 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttacc-acgaattctcataaaacaattgtctcatttggt |
266 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||| ||||||| |
|
|
| T |
13460191 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttacccaaaaattctcataaagtaattgtcttatttggt |
13460290 |
T |
|
| Q |
267 |
ttagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaa |
366 |
Q |
| |
|
|| |||||| || |||||||| ||||||| |||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | |||| |
|
|
| T |
13460291 |
tttgagataatattatggagaattgtggacttagcaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaa |
13460388 |
T |
|
| Q |
367 |
caatgatatat |
377 |
Q |
| |
|
| ||||||||| |
|
|
| T |
13460389 |
cgatgatatat |
13460399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 72 - 377
Target Start/End: Complemental strand, 35086769 - 35086465
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| | ||||| || |||| ||||| ||| || |||| | | ||||| ||||||||| ||||||||||| |
|
|
| T |
35086769 |
agctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgatactatatggcgcaaccacataaaac-tttgtgtcattagatacaaag |
35086671 |
T |
|
| Q |
172 |
tatatgg--tgcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| |||| |||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
35086670 |
tagatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttaccacaaattctcataaagtaattgtctcatttagtttt |
35086571 |
T |
|
| Q |
270 |
gagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaa |
369 |
Q |
| |
|
|||||| || || | |||||||||||||||||||||| ||||||||||| |||||| || | ||||||| |||||||| ||||||||||| ||||| | |
|
|
| T |
35086570 |
gagataatattaagtagagttgtggatttagtaagcttagtgggagtaattttata--ttgctagtttaatatgtcaattttattttatttagtcaacga |
35086473 |
T |
|
| Q |
370 |
tgatatat |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
35086472 |
tgatatat |
35086465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 72 - 377
Target Start/End: Complemental strand, 35150094 - 35149788
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||| |||||| || |||| ||||||||| ||||||| | || ||||||||||||||||| |||||||| |
|
|
| T |
35150094 |
agctgcataagatgaatttcaatatagtgtttcttaatgatgacattaatgatacaatatggtgcaactgaataaaacttttgtgtcaattgatacaaat |
35149995 |
T |
|
| Q |
172 |
tatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| ||||| |||| |||||||||| ||||||| |||||| ||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
35149994 |
tagatggtttgcaacatcatgaaatccacttataagttaaaaaatttgtctctttattgttaccacaaattctcataaagtaattgtctcatttggtttt |
35149895 |
T |
|
| Q |
270 |
gagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaa |
369 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||| | |
|
|
| T |
35149894 |
aagataatattatggagaattgtggatttagtaagctcagtgggagtaaatttatattttgatattttat-gtgtcaattatattttatttagtcaacga |
35149796 |
T |
|
| Q |
370 |
tgatatat |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
35149795 |
tgatatat |
35149788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 151 - 377
Target Start/End: Original strand, 349969 - 350195
Alignment:
| Q |
151 |
tttgtgtcaatagatacaaagtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaa |
248 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |||||| |||| |||| ||||||| |
|
|
| T |
349969 |
tttgtgtcattagatacaaagtagatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttcccacaaattgtcataaa |
350068 |
T |
|
| Q |
249 |
acaattgtctcatttggtttagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaat |
348 |
Q |
| |
|
||||||||||||| |||| |||||| || || | |||||||||||||||||||||| ||||||||||| |||||| || | ||||||| ||||||| |
|
|
| T |
350069 |
gtaattgtctcatttagttttgagataatattaagtagagttgtggatttagtaagcttagtgggagtaattttata--ttcctagtttaatatgtcaat |
350166 |
T |
|
| Q |
349 |
tatattttatttactcaacaatgatatat |
377 |
Q |
| |
|
| ||||||||||| ||||| ||||||||| |
|
|
| T |
350167 |
tttattttatttagtcaacgatgatatat |
350195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 74 - 377
Target Start/End: Complemental strand, 3813263 - 3812957
Alignment:
| Q |
74 |
ctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagta |
173 |
Q |
| |
|
||||||||||||||| |||||| ||| ||| |||||| || |||| ||| ||||| ||||||| | || ||||||| | ||||| ||||||||||| |
|
|
| T |
3813263 |
ctgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaactttgga-tcaattgatacaaagta |
3813165 |
T |
|
| Q |
174 |
tatggtgcaaaat--catgaaattcacttatgagttaagaaatttgtctcttaa----gtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
||||| |||| |||||||| ||||||| ||||||||||||||| | || |||||||||| ||||||||| || |||||||||||||| ||| |
|
|
| T |
3813164 |
gatggtttaaaaaggcatgaaatccacttataagttaagaaatttgttttttttttttgtgttaccacaaattctcatgaagcaattgtctcatttagtt |
3813065 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
3813064 |
ttgagataatattatggagaattgtggatttagtaagctcagtgggagaaaatttata--tttcaagtttaatgtgtaaattatattttatttagtcaac |
3812967 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
3812966 |
gatgatatat |
3812957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 47456700 - 47456744
Alignment:
| Q |
394 |
aatcaataaattttattaaaaactagaactctgctcaagacgaac |
438 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
47456700 |
aatcaacaaattttattaaaaaccagatctctgctcaagacgaac |
47456744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 10456 - 10763
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
10456 |
ggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattgatacaa |
10555 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
10556 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttaccaaaaattctcataaagtaattgtcttatttggtt |
10655 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | ||||| |
|
|
| T |
10656 |
ttgagataatattatggagaattgtggatttagcaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaac |
10753 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
10754 |
gatgatatat |
10763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 29190 - 29498
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
29190 |
ggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattgatacaa |
29289 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| || || ||||| ||||||||| ||||| | |||||||||||||||||||| |||||||| | |||||||||||| ||||||||| ||||||| |
|
|
| T |
29290 |
agtagatagtttgcaaagtcatgaaatccacttgtaagttaagaaatttgtctctttagtgttacagcaaattctcataaagtaattgtctcgtttggtt |
29389 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| || || ||||||||||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
29390 |
ttgagataatattatggagaattatgaatttagtaagctcagtgggagtaaatttata-ttttgagttttaatgtgtcaattttattttatttagtcaac |
29488 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
| ||||||| |
|
|
| T |
29489 |
tacgatatat |
29498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 6101560 - 6101867
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
6101560 |
ggagttgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcagctgaataaaacttttgtgtcaattgatacaa |
6101659 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
6101660 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttaccacaaattctcataaggtaattgtctcttttggtt |
6101759 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||||||||||||| |||||| | | ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6101760 |
ttgagataatattatggagaattgtggatttagcaagttcagtgggagtaagtttata--ctcctagtttaatatgtcaattttattttatatactcaac |
6101857 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
6101858 |
gatgatatat |
6101867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 117 - 377
Target Start/End: Original strand, 17579778 - 17580037
Alignment:
| Q |
117 |
ttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagtatatggt--gcaaaatcatgaaattcacttatgagttaagaaat |
214 |
Q |
| |
|
|||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17579778 |
ttaatgatacaatatggtgcaacttaagaaaacttttgtgtcaatagatacaaagtagatgttttgcaaaatcatgaaatccacttatgagttaagaaat |
17579877 |
T |
|
| Q |
215 |
ttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtttagagatagtaatatggagagttgtggatttagtaagctcagtggga |
314 |
Q |
| |
|
||||||||| | | |||| || ||||||||||| ||||| ||||||||| ||| || ||| || |||||||| |||||||||||| || ||||||||| |
|
|
| T |
17579878 |
ttgtctctttatttttactacatattctcataaagcaattatctcatttgcttttgacataatattatggagaattgtggatttagcaaattcagtggga |
17579977 |
T |
|
| Q |
315 |
gtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaatgatatat |
377 |
Q |
| |
|
|||| ||||||||| | ||||||| |||||||| || |||||||| ||||| ||||||||| |
|
|
| T |
17579978 |
gtaagtttatatttat--agtttaatatgtcaatt-tactttatttagtcaacgatgatatat |
17580037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 75 - 327
Target Start/End: Complemental strand, 21192979 - 21192725
Alignment:
| Q |
75 |
tgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagtat |
174 |
Q |
| |
|
||||||||||||||||||||||| | | | || ||||| || |||| ||||||||| |||||||| || || ||||| | || |||||||||||||| |
|
|
| T |
21192979 |
tgcataagatggatgtcaatacaatgtatcttgatggcgacattaacgatacaatatggtgcaatccaataattcttttatatcgatagatacaaagtag |
21192880 |
T |
|
| Q |
175 |
atggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtttagag |
272 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
21192879 |
atggtttgcaaagtcatgaaatcgacttataagttaagaaatttgtctctttagtgttaccacaaattctcataaagtaattgtctcatttagttttgag |
21192780 |
T |
|
| Q |
273 |
atagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatt |
327 |
Q |
| |
|
||| || || | |||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
21192779 |
ataatattaagtagagttgtggatttagtaagcttagtgggagtaattttatatt |
21192725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 77 - 377
Target Start/End: Complemental strand, 21772681 - 21772382
Alignment:
| Q |
77 |
cataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagtatat |
176 |
Q |
| |
|
|||||||||||| |||||| ||| ||| |||||| ||||||| ||| ||||| ||||||| | || | ||||| | ||||| ||||||||||| || |
|
|
| T |
21772681 |
cataagatggatttcaatatagtgtttcttaatgatgacgttaatgatgcaatatggtgcaactgaatcagactttgga-tcaattgatacaaagtagat |
21772583 |
T |
|
| Q |
177 |
ggtgcaaaat--catgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtttagagat |
274 |
Q |
| |
|
||| |||| |||||||| ||||||| ||||||||||||| ||| || ||||||||||| ||||||||| || |||||| ||||||| |||| ||||| |
|
|
| T |
21772582 |
ggtttaaaaaggcatgaaatccacttataagttaagaaatttatctttttagtgttaccacaaattctcatgaagcaattgcctcatttagttttgagat |
21772483 |
T |
|
| Q |
275 |
agtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaatgata |
374 |
Q |
| |
|
| || ||||||||||||||| |||||||||||| | ||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
21772482 |
aatattatggagagttgtggttttagtaagctccgagggagaaaatttata--tttcaagtttaatgtgtcaattatattttatttagtcaacgatgata |
21772385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 72 - 377
Target Start/End: Complemental strand, 32031568 - 32031263
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| | ||||| || |||| ||||||||| ||||| | | ||||||||| |||||||||||||||||||| |
|
|
| T |
32031568 |
agctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgatacaatatggtgctacttaagaaaactcttgtgtcaatagatacaaag |
32031469 |
T |
|
| Q |
172 |
tatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| ||| | ||||||||||||||| ||||||| |||||||||||||||||||| | || || || |||||| |||| ||||| ||||||||||||| |
|
|
| T |
32031468 |
tagatgttttgcaaaatcatgaaatccacttataagttaagaaatttgtctctttattggtaggacatattctcgtaaagcaattatctcatttggtttt |
32031369 |
T |
|
| Q |
270 |
gagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaa |
369 |
Q |
| |
|
|||||| || |||||||| |||||||||||| || |||||||||| || |||||||| | ||||||| |||||||| ||||||||||| |||| | |
|
|
| T |
32031368 |
gagataatattatggagaattgtggatttagcaaattcagtgggagaaagtttatattcat--agtttaatatgtcaattttattttatttagtcaatca |
32031271 |
T |
|
| Q |
370 |
tgatatat |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
32031270 |
tgatatat |
32031263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 8652905 - 8652651
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| |||||| || |||| ||| ||||| ||||||| | || ||||||| | |||||| ||||||||| |
|
|
| T |
8652905 |
agctacataagatggatgtcaatgcattgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt-gagtcaattgatacaaag |
8652807 |
T |
|
| Q |
172 |
tatatggtgcaaaat--catgaaattcacttatgagttaagaaatttgtctctta-agtgttaccacgaattctcataaaacaattgtctcatttggttt |
268 |
Q |
| |
|
|| ||||| |||| |||||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||| | || ||||||||||||||| ||| |
|
|
| T |
8652806 |
tagatggtttaaaaaagcatgaaatccacttataagttaagaaatttgtcttttttagtgttaccacaaattctcttgaagcaattgtctcatttgattt |
8652707 |
T |
|
| Q |
269 |
agagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttat |
324 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
8652706 |
tgagataatattatggagagttgtggatttaacaagttcagtgggagtaagtttat |
8652651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 12436766 - 12436828
Alignment:
| Q |
186 |
tcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaa |
248 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||| | || |||||| |||||||||||| |
|
|
| T |
12436766 |
tcataaaatgcacttatgtgttaagaaatttgtctctttattgctaccacaaattctcataaa |
12436828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 12688276 - 12687969
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
12688276 |
ggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattgatacaa |
12688177 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
12688176 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttaccaaaaattctcataaagtaattgtcttatttggtt |
12688077 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| ||||||||||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | ||||| |
|
|
| T |
12688076 |
ttgagataatattatggagaattgtggatttaacaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaac |
12687979 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
12687978 |
gatgatatat |
12687969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 32096310 - 32096003
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| | |||| ||| ||| ||||||| || |||| ||||||| | |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
32096310 |
ggagctgcataagatggattttaatatagtgtttcttaatggtgacattaacgatacaagatggtgcatctgaataaaacttttgtgtcaattgatacaa |
32096211 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| ||||| ||||| | ||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
32096210 |
agtaaatggtttgcaaagttatgaaatccacttataagttaagaaatttgtctctttagtgttaccaaaaattctcataaagtaattgtcttatttggtt |
32096111 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | ||||| |
|
|
| T |
32096110 |
ttgagataatattatggagaattgtggatttagcaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaac |
32096013 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
32096012 |
gatgatatat |
32096003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 28527480 - 28527174
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| || || ||||||||||||||||| ||||||| |
|
|
| T |
28527480 |
ggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatttgaataaaacttttgtgtcaattgatacaa |
28527381 |
T |
|
| Q |
170 |
agtatatgg--tgcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| |||| |||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||| || |||| | | |||||||| |
|
|
| T |
28527380 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctt-tgtgttaccaaaaattctcattaagtaattattttatttggtt |
28527282 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||| ||| |||| ||||||||| | ||||| |
|
|
| T |
28527281 |
ttgagataatattatggagaattgtggatttagcaagttcagtgggagtaattttata--tttctagtttaatatgttaattttattttattcagtcaac |
28527184 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
28527183 |
gatgatatat |
28527174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 19061818 - 19061507
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
|||||||||||||||| || |||||| ||| ||| ||||||| || |||| ||||||||| ||||||| | || ||| |||| || ||||| ||||||| |
|
|
| T |
19061818 |
ggagctgcataagatgaatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaactgaataaagctttcgtttcaattgatacaa |
19061719 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
||| || || ||||| ||||||||| | ||||| ||||||||||||||||||| |||| ||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
19061718 |
agttgatagtttgcaaagtcatgaaatccccttatatgttaagaaatttgtctctttagtggtaccaaaaattctcataaagtaattctctcatttggtt |
19061619 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaa----atttatatttttcaagtttaacgtgtcaattatattttatttact |
363 |
Q |
| |
|
| |||||| || | |||| | |||||||||| ||||||||||||||||||| ||| ||||||| ||||||| |||||||| ||||||||||| | |
|
|
| T |
19061618 |
ttgagataatattctggaaaattgtggattttgtaagctcagtgggagtaattttttttttattttttgagtttaa--tgtcaattttattttatttatt |
19061521 |
T |
|
| Q |
364 |
caacaatgatatat |
377 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
19061520 |
caacgatgatatat |
19061507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 377
Target Start/End: Original strand, 41295388 - 41295633
Alignment:
| Q |
145 |
aaaacttttgtgtcaatagatacaaagtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttacc--------- |
233 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
41295388 |
aaaacttttgtgtcaattgatacaaagtaaatggtttgcaaagtcatgaaatccacttataagttaataaatttgtctctttagtgttaccaaaaaaaaa |
41295487 |
T |
|
| Q |
234 |
----acgaattctcataaaacaattgtctcatttggtttagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttt |
329 |
Q |
| |
|
| || |||||||| ||||||| ||||||||| |||||| || |||||||| |||||||||||| | | ||||||||||||| |||||| || |
|
|
| T |
41295488 |
aaaaaaaaaaactcataaagtgattgtcttatttggttttgagataatattatggagaattgtggatttagcaggttcagtgggagtaattttata--tt |
41295585 |
T |
|
| Q |
330 |
tcaagtttaacgtgtcaattatattttatttactcaacaatgatatat |
377 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| | ||||| ||||||||| |
|
|
| T |
41295586 |
tctagtttaatacgtcaattttattttattcaatcaacgatgatatat |
41295633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 26508441 - 26508532
Alignment:
| Q |
283 |
ggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaatgatatat |
377 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | || | |||| || |||||| ||||||||||| |||||||||| |||| |
|
|
| T |
26508441 |
ggagagttgtggattt-gtaagctcagtgggagtaaatttata--tatctattttagtgtatcaattttattttatttagtcaacaatgaaatat |
26508532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 41293166 - 41293233
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgca |
137 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| |
|
|
| T |
41293166 |
ggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgca |
41293233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 72 - 377
Target Start/End: Original strand, 5186886 - 5187192
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagata-caaa |
170 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||| |||||| |||| |||| ||||||||| ||||||| | ||||||||||| |||||||| |||| ||| |
|
|
| T |
5186886 |
agctacataagatggatgacaatacagtgtttcttaatgacaacattaatgatacaatatggtgcaactgaagaaaactttcgtgtcaattgatataaaa |
5186985 |
T |
|
| Q |
171 |
gtatatg--gtgcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttt |
268 |
Q |
| |
|
||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||| | ||||| |||||||||||||||||| |
|
|
| T |
5186986 |
gtagatgatttgcaaaatcatgtaatccacttatgagttaagaaatttgtctctttagtgttaccataaattttgataaagtaattgtctcatttggttt |
5187085 |
T |
|
| Q |
269 |
agagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaaca |
368 |
Q |
| |
|
|||||| || |||| ||| ||||||||||||||||||||||||| ||||| ||||| |||| ||||||| ||| | || ||||||||||| ||||| |
|
|
| T |
5187086 |
tgagataatattatgaagaattgtggatttagtaagctcagtgggggtaaacttata--tttctagtttaatgtgccggttttattttatttagtcaact |
5187183 |
T |
|
| Q |
369 |
atgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
5187184 |
atgatatat |
5187192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 74 - 377
Target Start/End: Complemental strand, 26959228 - 26958926
Alignment:
| Q |
74 |
ctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagta |
173 |
Q |
| |
|
||||||||||||||| |||||| ||| ||| |||||| || |||| ||| ||||| ||||||| | || ||||||| | ||||| |||| |||||| |
|
|
| T |
26959228 |
ctgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaactttgga-tcaattgatataaagta |
26959130 |
T |
|
| Q |
174 |
tatggtgcaaaat--catgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtttaga |
271 |
Q |
| |
|
||||| |||| |||||||| ||||||| ||||||||||||||||| || ||| ||||||| ||||||||| || |||||||||||||| |||| || |
|
|
| T |
26959129 |
gatggtttaaaaaggcatgaaatccacttataagttaagaaatttgtctttttagtattaccacaaattctcatgaagcaattgtctcatttagttttga |
26959030 |
T |
|
| Q |
272 |
gatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaatg |
371 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
26959029 |
gataatattatggagagttgtggatttagtaagctcagtgggagaaaatttata--tttcaagtttaatgtgtcaattatattttatttagtcaacgatg |
26958932 |
T |
|
| Q |
372 |
atatat |
377 |
Q |
| |
|
|||||| |
|
|
| T |
26958931 |
atatat |
26958926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 48165242 - 48165548
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| || ||| ||||||| || |||| ||||||||| ||||||| |||| ||| ||||||||| ||| ||||||| |
|
|
| T |
48165242 |
ggagctgcataagatggatttcaatatggt-tttcttaatggtgacattaatgatacaatatggtgcaactaaataaagcttttgtgttaattgatacaa |
48165340 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| || || ||||| ||||||||| ||||| | |||||| ||||||||||||| |||||||| || |||||||||||| ||||||||| ||||||| |
|
|
| T |
48165341 |
agtagatagtttgcaaagtcatgaaatccacttgtaagttaaaaaatttgtctctttagtgttacaacaaattctcataaagtaattgtctcgtttggtt |
48165440 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || || | |||||||||||||||||||||| ||||||||||| |||||| || | ||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
48165441 |
ttgagataatattaagtagagttgtggatttagtaagcttagtgggagtaattttata--ttcctagtttaatatgtcaattttattttatttagtcaac |
48165538 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
48165539 |
gatgatatat |
48165548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 10735448 - 10735194
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| || ||| || |||| ||| ||||| ||||||| | || |||| |||| |||||| ||||||||| |
|
|
| T |
10735448 |
agctacataagatggatgtcaatgcattgtttcttcatgatgacattaatgatgcaatatggtgcaactgaatcaaac-tttgagtcaattgatacaaag |
10735350 |
T |
|
| Q |
172 |
tatatggtgcaaaa--tcatgaaattcacttatgagttaagaaatttgtc-tcttaagtgttaccacgaattctcataaaacaattgtctcatttggttt |
268 |
Q |
| |
|
|| ||||| |||| |||||||| ||||||| |||||||||||||||| | || ||||||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
10735349 |
tagatggtttaaaaaggcatgaaatccacttataagttaagaaatttgtcttttttagtgttaccacaaattctcatgaagcaattgtctcatttggttt |
10735250 |
T |
|
| Q |
269 |
agagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttat |
324 |
Q |
| |
|
|||||| || |||||||||||||| ||||| ||| ||||||||||||| ||||| |
|
|
| T |
10735249 |
tgagataatagtatggagagttgtgaatttaacaagttcagtgggagtaagtttat |
10735194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 10949217 - 10948963
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| || ||| || |||| ||| ||||| ||||||| | || |||| |||| |||||| ||||||||| |
|
|
| T |
10949217 |
agctacataagatggatgtcaatgcattgtttcttcatgatgacattaatgatgcaatatggtgcaactgaatcaaac-tttgagtcaattgatacaaag |
10949119 |
T |
|
| Q |
172 |
tatatggtgcaaaa--tcatgaaattcacttatgagttaagaaatttgtc-tcttaagtgttaccacgaattctcataaaacaattgtctcatttggttt |
268 |
Q |
| |
|
|| ||||| |||| |||||||| ||||||| |||||||||||||||| | || ||||||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
10949118 |
tagatggtttaaaaaggcatgaaatccacttataagttaagaaatttgtcttttttagtgttaccacaaattctcatgaagcaattgtctcatttggttt |
10949019 |
T |
|
| Q |
269 |
agagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttat |
324 |
Q |
| |
|
|||||| || |||||||||||||| ||||| ||| ||||||||||||| ||||| |
|
|
| T |
10949018 |
tgagataatagtatggagagttgtgaatttaacaagttcagtgggagtaagtttat |
10948963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 32282793 - 32282928
Alignment:
| Q |
77 |
cataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagtatat |
176 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| | ||||||| || |||||| ||||||| | | ||||| ||||| ||||| | ||||||||||| |
|
|
| T |
32282793 |
cataagatggatgtcaatacaatatttcttaatgtcgacgttaatga-acaatatggtgcaaccagataaaac-attgtgacaatatacacaaagtatat |
32282890 |
T |
|
| Q |
177 |
gg--tgcaaaatcatgaaattcacttatgagttaagaa |
212 |
Q |
| |
|
| |||||| | || ||| ||||||||||||||||| |
|
|
| T |
32282891 |
agtttgcaaagtaatagaatacacttatgagttaagaa |
32282928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 42193329 - 42193021
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
42193329 |
ggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgtcaattgatacaa |
42193230 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttacc-acgaattctcataaaacaattgtctcatttggt |
266 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||| ||||||| |
|
|
| T |
42193229 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttacccaaaaattctcataaagtaattgtcttatttggt |
42193130 |
T |
|
| Q |
267 |
ttagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaa |
366 |
Q |
| |
|
|| |||||| || |||||||| ||||||| |||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | |||| |
|
|
| T |
42193129 |
tttgagataatattatggagaattgtggacttagcaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaa |
42193032 |
T |
|
| Q |
367 |
caatgatatat |
377 |
Q |
| |
|
| ||||||||| |
|
|
| T |
42193031 |
cgatgatatat |
42193021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 10762754 - 10762447
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||||| || |||| || |||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
10762754 |
ggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgacacaatatggtgcatctgaataaaacttttgtgtcaattgatacaa |
10762655 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| ||| | ||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||| || |||||||| |||||||| |
|
|
| T |
10762654 |
agtaaatgatttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttaccaaaaattctcatgaagtaattgtcttatttggtt |
10762555 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||| |||||||| ||||||||| | ||||| |
|
|
| T |
10762554 |
ttgagataatattatggagaattgtggatttagcaagttcagtgggagtaattttata--tttctagtttaatatgtcaattttattttattcagtcaac |
10762457 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
10762456 |
gatgatatat |
10762447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 49155744 - 49156050
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| || || ||||||||||||||||| ||||||| |
|
|
| T |
49155744 |
ggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatttgaataaaacttttgtgtcaattgatacaa |
49155843 |
T |
|
| Q |
170 |
agtatatgg--tgcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| |||| |||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||| || |||| | | |||||||| |
|
|
| T |
49155844 |
agtaaatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctt-tgtgttaccaaaaattctcattaagtaattattttatttggtt |
49155942 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||| ||| |||| ||||||||| | ||||| |
|
|
| T |
49155943 |
ttgagataatattatggagaattgtggatttagcaagttcagtgggagtaattttata--tttctagtttaatatgttaattttattttattcagtcaac |
49156040 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
49156041 |
gatgatatat |
49156050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 11841841 - 11841534
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| |||||| || |||| ||| ||||| ||||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
11841841 |
ggagctgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaataaaacttttgtgtcaattgatacaa |
11841742 |
T |
|
| Q |
170 |
agtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||| |||||||||||||||||||| |||||| |||| |||||||||||| ||||||| ||||||| |
|
|
| T |
11841741 |
agtaaatggtttgcaaagtcatgaaacccacttataagttaagaaatttgtctctttagtgttgccacaaattctcataaagtgattgtcttgtttggtt |
11841642 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaac |
367 |
Q |
| |
|
| |||||| || |||||||| |||||||||||| ||| |||||| |||||| |||||||| | |||| || |||||||| ||||||||||| ||||| |
|
|
| T |
11841641 |
ttgagataatattatggagaattgtggatttagcaagttcagtgtgagtaagtttatattcct--agttcaatatgtcaattttattttatttagtcaac |
11841544 |
T |
|
| Q |
368 |
aatgatatat |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
11841543 |
gatgatatat |
11841534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 10240310 - 10240055
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| |||||| || |||| ||| ||||| ||||||| | || ||||||| | |||||| ||||||||| |
|
|
| T |
10240310 |
agctacataagatggatgtcaatgcattgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt-gagtcaattgatacaaag |
10240212 |
T |
|
| Q |
172 |
tatatggtgcaaaat--catgaaattcacttatgagttaagaaatttgtctctta--agtgttaccacgaattctcataaaacaattgtctcatttggtt |
267 |
Q |
| |
|
|| ||||| |||| |||||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
10240211 |
tagatggtttaaaacggcatgaaatccacttataagttaagaaatttgtctttttttagtgttaccacaaattctcatgaaccaattgtctcatttggtt |
10240112 |
T |
|
| Q |
268 |
tagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttat |
324 |
Q |
| |
|
| |||||| || |||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
10240111 |
ttgagataatattatggagagttgtggatttaacaagttcagtgggagtaagtttat |
10240055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 38451164 - 38450910
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| |||||| || | || ||| ||||| ||||||| | || |||| |||| |||||| ||||||||| |
|
|
| T |
38451164 |
agctacataagatggatgtcaatgcattgtttcttaatgatgacatcaatgatgcaatatggtgcaactgaatcaaac-tttgagtcaattgatacaaag |
38451066 |
T |
|
| Q |
172 |
tatatggtgcaaaa--tcatgaaattcacttatgagttaagaaatttgtc-tcttaagtgttaccacgaattctcataaaacaattgtctcatttggttt |
268 |
Q |
| |
|
|| ||||| |||| |||||||| ||||||| |||||||||||||||| | || ||||||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
38451065 |
tagatggtttaaaaagacatgaaatccacttataagttaagaaatttgtcttttttagtgttaccacaaattctcatgaagcaattgtctcatttggttt |
38450966 |
T |
|
| Q |
269 |
agagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttat |
324 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
38450965 |
tgagataatattatggagagttgtggatttaacaagttcagtgggagtaagtttat |
38450910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 29596853 - 29596696
Alignment:
| Q |
122 |
gatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaagtatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtc |
219 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||| ||| |||||||||||||| || |
|
|
| T |
29596853 |
gatacaatatggtgcaaccaaagaaaactt--gtgtcaatagatacaaagtcgttggtttgcaaagtcatgaaattcatttacgagttaagaaatttttc |
29596756 |
T |
|
| Q |
220 |
tct----taagtgttaccacgaattctcataaaacaattgtctcatttggtttagagata |
275 |
Q |
| |
|
||| ||| |||||| || ||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
29596755 |
tctctattaattgttactacaaattcacataaaacaattgtctcattttgttttgagata |
29596696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 72 - 377
Target Start/End: Original strand, 32895081 - 32895386
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| | ||||| || |||| ||||| ||| || |||| | | |||| ||||||||| ||||||||||| |
|
|
| T |
32895081 |
agctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgatactatacggcgcaaccacaaaaaaactttgtgtcattagatacaaag |
32895180 |
T |
|
| Q |
172 |
tatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
32895181 |
tagatggtttgcaaagtcatgaaatccacttataagttaagaaatttgtctctttagtgttaccacaaattctcataaagtaattgtctcatttagtttt |
32895280 |
T |
|
| Q |
270 |
gagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaa |
369 |
Q |
| |
|
|||||| || || | |||||||||||||||||||||| ||||||||||| |||||| || | ||||||| |||||||| ||||||||||| ||||| | |
|
|
| T |
32895281 |
gagataatattaagtagagttgtggatttagtaagcttagtgggagtaattttata--ttgctagtttaatatgtcaattttattttatttagtcaacga |
32895378 |
T |
|
| Q |
370 |
tgatatat |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
32895379 |
tgatatat |
32895386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 72 - 377
Target Start/End: Complemental strand, 39729339 - 39729034
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||| | ||||| || |||| ||||||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
39729339 |
agctacataagatggatgtcaatacattttttctcaatggtgacattaatgatacaatatggtgcaacttaagaaaacttttgtgtcaatagatacaaag |
39729240 |
T |
|
| Q |
172 |
tatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| ||| | ||||| ||||||||| |||||||||||||||||||| ||||||| | |||||| || ||||||||||| ||||| |||||||| |||| |
|
|
| T |
39729239 |
tagatgttttgcaaagtcatgaaatccacttatgagttaagaaattagtctctttattgttactacatattctcataaagcaattatctcattttgtttt |
39729140 |
T |
|
| Q |
270 |
gagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaa |
369 |
Q |
| |
|
||||| || |||||||| ||| |||||||| || ||||||||||||| |||||||| | |||| || |||||||| ||||||||||| ||||| | |
|
|
| T |
39729139 |
gagatgatattatggagaattgcggatttagcaaattcagtgggagtaagtttatattcat--agttgaatatgtcaattttattttatttagtcaacga |
39729042 |
T |
|
| Q |
370 |
tgatatat |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
39729041 |
tgatatat |
39729034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 70 - 377
Target Start/End: Complemental strand, 5544282 - 5543963
Alignment:
| Q |
70 |
ggagctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaa |
169 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||| ||||||| || |||| ||||||||| |||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
5544282 |
ggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatatgaataaaacttttgtgtcaattgatacaa |
5544183 |
T |
|
| Q |
170 |
agtatatgg--tgcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttacc------------acgaattctcataaaacaattg |
255 |
Q |
| |
|
|| | |||| |||||| ||||||||| ||||||| |||||| ||||||||||||| ||||||||| | || ||||||||| |||| |
|
|
| T |
5544182 |
agaaaatggtttgcaaagtcatgaaatccacttataagttaataaatttgtctctttagtgttaccaaaaaaaaaaaaaaaaaatctcataaagtgattg |
5544083 |
T |
|
| Q |
256 |
tctcatttggtttagagatagtaatatggagagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattt |
355 |
Q |
| |
|
||| ||||||||| |||||| || |||||||| |||||||||||| ||| || |||||||||| |||||| |||| ||||||| ||||||| ||||| |
|
|
| T |
5544082 |
tcttatttggttttgagataatattatggagaattgtggatttagcaagttcggtgggagtaattttata--tttctagtttaatacgtcaattttattt |
5543985 |
T |
|
| Q |
356 |
tatttactcaacaatgatatat |
377 |
Q |
| |
|
|||| | ||||| ||||||||| |
|
|
| T |
5543984 |
tattcaatcaacgatgatatat |
5543963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 72 - 273
Target Start/End: Original strand, 14414032 - 14414235
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| | ||||| || |||| ||| ||||| ||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
14414032 |
agctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgattcaatatggtgcaacttaagaaaactcttgtgtcaatagatacaaag |
14414131 |
T |
|
| Q |
172 |
tatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| ||| | ||||||||||||||| |||||||||||||||||||||||||||| | |||||| || ||||||||||| |||| ||||||||| ||| |
|
|
| T |
14414132 |
tagatgttttgcaaaatcatgaaatccacttatgagttaagaaatttgtctctttattgttactacatattctcataaagtaattatctcatttgatttt |
14414231 |
T |
|
| Q |
270 |
gaga |
273 |
Q |
| |
|
|||| |
|
|
| T |
14414232 |
gaga |
14414235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 375
Target Start/End: Original strand, 30413400 - 30413588
Alignment:
| Q |
186 |
tcatgaaattcacttatgagttaagaaatttgtctcttaagtgtt-accacgaattctcataaaacaattgtctcatttggtttagagatagtaatatgg |
284 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| | | |||| ||||| |||||||||||| |||||||||||||| ||| |||||| || || | |
|
|
| T |
30413400 |
tcatgaaatccacttatgagttaagaaatttttctagttaatgtttaccacaaattctcataaagtaattgtctcatttgattttgagataatattaagt |
30413499 |
T |
|
| Q |
285 |
agagttgtggatttagtaagctcagtgggagtaaatttatatttttcaagtttaacgtgtcaattatattttatttactcaacaatgatat |
375 |
Q |
| |
|
||| ||||| |||||||||||| | ||| |||||||||| | ||| || ||||| ||||| ||| ||||||||||| | ||| ||||||| |
|
|
| T |
30413500 |
agaattgtgaatttagtaagctaattggaagtaaatttaaa--tttaaattttaatgtgtcgattttattttatttagtaaactatgatat |
30413588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 72 - 273
Target Start/End: Complemental strand, 4679 - 4476
Alignment:
| Q |
72 |
agctgcataagatggatgtcaatacagtattttttaatggcaacgttaaggatacaataaggtgcaattaaagaaaacttttgtgtcaatagatacaaag |
171 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| | ||||| || |||| ||| ||||| ||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
4679 |
agctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgattcaatatggtgcaacttaagaaaactcttgtgtcaatagatacaaag |
4580 |
T |
|
| Q |
172 |
tatatggt--gcaaaatcatgaaattcacttatgagttaagaaatttgtctcttaagtgttaccacgaattctcataaaacaattgtctcatttggttta |
269 |
Q |
| |
|
|| ||| | ||||||||||||||| |||||||||||||||||||||||||||| | |||||| || ||||||||||| |||| ||||||||| ||| |
|
|
| T |
4579 |
tagatgttttgcaaaatcatgaaatccacttatgagttaagaaatttgtctctttattgttactacatattctcataaagtaattatctcatttgatttt |
4480 |
T |
|
| Q |
270 |
gaga |
273 |
Q |
| |
|
|||| |
|
|
| T |
4479 |
gaga |
4476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10461 times since January 2019
Visitors: 7978