View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100_high_7 (Length: 250)
Name: NF2100_high_7
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 13519552 - 13519320
Alignment:
| Q |
8 |
attagcattcattttgtatgtgtctgaaaacaatataatcccacattgagctatcagtatcacatacatggcacaagtatagtttttcctaaattgcggt |
107 |
Q |
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| T |
13519552 |
attagcagtcattttgtatgtgtctgaaaacaatataatcccgcattgagctattagtatcacatacatggcacaagtatagtttttcctaaattgcggt |
13519453 |
T |
|
| Q |
108 |
agcaccaagactatgattatattgtgatttggttgaagtgctcaactatatttttgcctaaattttctggtagcacattttaattctgtcaaactcacca |
207 |
Q |
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| T |
13519452 |
agca-caagactataaccatattgtgatttggtcgaagtgctcaactatgtttttgcctaaattgtctggtagcacgttttaattctgtcaaactcacca |
13519354 |
T |
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| Q |
208 |
tgaatccatacatacttttgccttttagtataat |
241 |
Q |
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|||||| |||||||||||||||||||| |||| |
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| T |
13519353 |
caaatccaaacatacttttgccttttagtttaat |
13519320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 1845516 - 1845332
Alignment:
| Q |
58 |
ctatcagtatcacatacatggcacaagtatagtttttcctaaattgcggtagcaccaagactatgattatattgtgatttggttgaagtgctcaactata |
157 |
Q |
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| T |
1845516 |
ctatcagtatcacatacatggcacaagtatagtttttcctaaattgcggtagcac-aagactatgactatattgtgatttggttgaagtgctcaactatg |
1845418 |
T |
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| Q |
158 |
tttttgcctaaattttctggtagcacattttaattctgtcaaactcaccatgaatccatacatacttttgccttttagtataatct |
243 |
Q |
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| T |
1845417 |
tttttgcctaaattgtctggtagcacattttaattctgtcaaactcaccatgaatccatacatacttttgccttttagtttaatct |
1845332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 63 - 232
Target Start/End: Complemental strand, 56560175 - 56560007
Alignment:
| Q |
63 |
agtatcacatacatggcacaagtatagtttttcctaaattgcggtagcaccaagactatgattatattgtgatttggttgaagtgctcaactatattttt |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
56560175 |
agtatcacatacatggcacaagtatagtttttcctaaattgcggtagcac-aagactatgaccatattgtgatttggttgaagtgctcaactatgttttt |
56560077 |
T |
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| Q |
163 |
gcctaaattttctggtagcacattttaattctgtcaaactcaccatgaatccatacatacttttgccttt |
232 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
56560076 |
gcctaaattgtctggtagcacgttttaattctgtcaaactcaccacgaatccaaacatacttttgccttt |
56560007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 7204189 - 7204104
Alignment:
| Q |
149 |
tcaactatatttttgcctaaattttctggtagcacattttaattctgtcaaactcaccatgaatccatacatacttttgcctttta |
234 |
Q |
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|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
7204189 |
tcaactatgtttttgcctaaattgtctcgtagcacattttaattctgtcaaactcaccacgaatccaaacatacttttgcctttta |
7204104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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