View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2100_low_1 (Length: 693)

Name: NF2100_low_1
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2100_low_1
NF2100_low_1
[»] chr4 (1 HSPs)
chr4 (23-681)||(334351-335011)


Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 23 - 681
Target Start/End: Complemental strand, 335011 - 334351
Alignment:
Q  23 ccatcattattcacaagaatatgttattactagccaaagcgtttgataatacctgagcattatctgttttcaatttttgaagctcttcctgggtgcatat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  335011 ccatcattattcacaagaatatgttattactagccaaagcgtttgataatacctgagcattatctgttttcaatttttgaagctcttcctgggtgcatat 334912  T
Q  123 gagccta--gatgatacaaagcaaggttaatgagtaaaaccacctatattttagcatataatccaactaacttttataatacaatacctccattgcaaat 220  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334911 gagcctatagatgatacaaagcaaggttaatgagtaaaaccacctatattttagcatataatccaactaacttttataatacaatacctccattgcaaat 334812  T
Q  221 cagttatctcatgaagcaactccttttccctctcgtgagctgattcaagctgcagtaatgtatagccgatatttcttttaaattaataccgggaaaaaca 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  334811 cagttatctcatgaagcaactccttttccctctcgtgagctgattcaagctgcagtaatgtatagccgatatttcttttaaattaataccgggaaaagca 334712  T
Q  321 gatataatggcattcaaataaaacgattttaatacaaacgagagaaagaaaaatgtctacttataggtaatacagcaagtaaacttgttgcatttggatt 420  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334711 gatataatggcattcaaataaaacgatcttaatacaaacgagagaaagaaaaatgtctacttataggtaatacagcaagtaaacttgttgcatttggatt 334612  T
Q  421 ttacaaattcaacttatttccttgctaattgataagcaccaaacacttgggaaacctcacttaaaagttagctgtcaaagaaaaagaaccacaccattta 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334611 ttacaaattcaacttatttccttgctaattgataagcaccaaacacttgggaaacctcacttaaaagttagctgtcaaagaaaaagaaccacaccattta 334512  T
Q  521 actacaccgaaaatttcatactaatatggacttagcatcctataaaacccaagttcttatcactaatttgtacggtactagcgatcagggcctgtcttcc 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334511 actacaccgaaaatttcatactaatatggacttagcatcctataaaacccaagttcttatcactaatttgtacggtactagcgatcagggcctgtcttcc 334412  T
Q  621 attcatcttaaatccaatttacctccagcacaccaaaaatcgcagtgaattatgtacccta 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334411 attcatcttaaatccaatttacctccagcacaccaaaaatcgcagtgaattatgtacccta 334351  T

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