View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100_low_11 (Length: 236)
Name: NF2100_low_11
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100_low_11 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 165388 - 165151
Alignment:
| Q |
1 |
tccttattttgaaggaaagaattgtgactatgtcatatgtttgtcatcaaaattaagcatac----------------ctgagatttcttgatgaaatca |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
165388 |
tccttattttgaaggaaagaattgtgactatgtcatatgtttgtcatcaaaattaagcatactcaaaattaagcatacctgagatttcttgatgaaatca |
165289 |
T |
|
| Q |
85 |
tgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatggcaaaactagtatcccatacttggctaccaaaagtct |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
165288 |
tgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatggcaaaactagtatcccatacttggctcccaaaagtct |
165189 |
T |
|
| Q |
185 |
gcattgtattgatacaaaagttatttactgaatatatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
165188 |
gcattgtattgatacaaaagttatttactgaatatatt |
165151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 104746 - 104550
Alignment:
| Q |
21 |
attgtgactatgtcatatgtttgtcatcaaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaatt |
120 |
Q |
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||||||| ||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| | |||| ||| || |
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| T |
104746 |
attgtgattatattatatgtttgtcatcaaaattaaacatacctgagatttcttaatgaaatcatgtcctttggcaagtgcaggttcgatttcatcattt |
104647 |
T |
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| Q |
121 |
aggttggtggcaagcaaagcttgaatggcaaaactagtatcccatacttggctaccaaaagtctgcattgtattgatacaaaagttatttactgaat |
217 |
Q |
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| T |
104646 |
aggttagcggcaagcaaagcttgaacggcaaaaccagcatcccattcttggctaccaaaactctgcattgtattgacaggaaaattatttaatgaat |
104550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 5669526 - 5669666
Alignment:
| Q |
49 |
aaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatgg |
148 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| | |||| ||| || | |||||| ||||||| |||||||||||||||| |||| |
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| T |
5669526 |
aaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagcttcaatga |
5669625 |
T |
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| Q |
149 |
caaaactagtatcccatacttggctaccaaaagtctgcatt |
189 |
Q |
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| T |
5669626 |
tcaaactagcatcccatgtttggctaccaaaactctgcatt |
5669666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 5690183 - 5690323
Alignment:
| Q |
49 |
aaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatgg |
148 |
Q |
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|||| ||| ||||||||||| ||||||||||| | |||||||||| |||||| ||| || | |||||||||||||| ||||||||||||||||||||| |
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| T |
5690183 |
aaaactaaacatacctgagaattcttgatgaatttatgtccttttgcaagtgttggaccaatatcctcaattaggttagtggcaagcaaagcttgaatga |
5690282 |
T |
|
| Q |
149 |
caaaactagtatcccatacttggctaccaaaagtctgcatt |
189 |
Q |
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| T |
5690283 |
tcaaactagcatcccatgtttggctaccaaaactctgcatt |
5690323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 5721780 - 5721920
Alignment:
| Q |
49 |
aaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatgg |
148 |
Q |
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|||| ||| ||||||||||| ||||||||| | |||||||||||| |||||| | | || | ||||||| |||||| ||||||||||||||||||||| |
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| T |
5721780 |
aaaactaaacatacctgagaattcttgatgtattcatgtccttttgcaagtgttgaaccaatatcctcaactaggttagtggcaagcaaagcttgaatga |
5721879 |
T |
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| Q |
149 |
caaaactagtatcccatacttggctaccaaaagtctgcatt |
189 |
Q |
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| T |
5721880 |
tgaaactagcatcccatgtttggctaccaaaactctgcatt |
5721920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 12136906 - 12137042
Alignment:
| Q |
59 |
atacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatggcaaaactagt |
158 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |||| ||| | |||||||||| |||||||||||||| | |
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| T |
12136906 |
atacctgagatttcttgatgaaatcatgtgcttttgcaagtgcaggaccaatttcctcgattaagttagacgcaagcaaagtttgaatggcaaaaccaac |
12137005 |
T |
|
| Q |
159 |
atcccatacttggctaccaaaagtctgcattgtattg |
195 |
Q |
| |
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||||||| ||||||||||||| |||||||| ||||| |
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| T |
12137006 |
atcccatttttggctaccaaaactctgcattatattg |
12137042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 13053277 - 13053143
Alignment:
| Q |
59 |
atacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatggcaaaactagt |
158 |
Q |
| |
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|||||||||||||||||||||| ||||||||| | ||||||||||| || |||| ||||||| ||| ||||||||||||||||||| ||||||| | |
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| T |
13053277 |
atacctgagatttcttgatgaagtcatgtcctctggcaagtgcaggaccaatttcttcaattaagtttgtggcaagcaaagcttgaacagcaaaacctgc |
13053178 |
T |
|
| Q |
159 |
atcccatacttggctaccaaaagtctgcattgtat |
193 |
Q |
| |
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||||||| |||| ||||||||| ||| |||||||| |
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| T |
13053177 |
atcccattcttgactaccaaaactctacattgtat |
13053143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 91815 - 91970
Alignment:
| Q |
48 |
caaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatg |
147 |
Q |
| |
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||||||||| | |||||| |||||||||||||||||||| ||||| ||||| | || || |||||||| ||||| ||||||||||||||||||| |
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| T |
91815 |
caaaattaaacttacctgtgatttcttgatgaaatcatgacctttcgcaagtactgggccaatttcctcagttaggccagtggcaagcaaagcttgaaca |
91914 |
T |
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| Q |
148 |
gcaaaactagtatcccatacttggctaccaaaagtctgcattgtattgatacaaaa |
203 |
Q |
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| T |
91915 |
gaaaaactagtattccatccttggctacccaaactctgagttgtattgatagaaaa |
91970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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