View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100_low_13 (Length: 213)
Name: NF2100_low_13
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100_low_13 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 37705427 - 37705230
Alignment:
| Q |
16 |
ataagaaatgtggtcaatgctgaaccaattataaaggtggtctaccgtagaactcgcgagtagagtatcgatatccgatgacatctgatactttttcttt |
115 |
Q |
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| T |
37705427 |
ataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaacccacgagttgagtatcgatatccgatggcatctgatactttttcttt |
37705328 |
T |
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| Q |
116 |
ttatatgctcaatgcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaaa |
213 |
Q |
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| T |
37705327 |
ttatatgctcaatgcattttcttttgtgctgtaacaaactttgaagaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaaa |
37705230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 37438101 - 37437932
Alignment:
| Q |
44 |
ttataaaggtggtctaccgtagaactcgcgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgcattttcttttgtg |
143 |
Q |
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| T |
37438101 |
ttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagtgcattttcttatgtg |
37438002 |
T |
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| Q |
144 |
ctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaaa |
213 |
Q |
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| T |
37438001 |
ctataataagctttgaggaaattataaatttaaagaaatttttgtagtttagttaagaaccatagaaaaa |
37437932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 37700748 - 37700646
Alignment:
| Q |
36 |
tgaaccaattataaaggtggtctaccgtagaactcgcgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgcatttt |
135 |
Q |
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||||||| ||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||| | ||| |||||||||||| |||||| |||||||| |
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| T |
37700748 |
tgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgcatttt |
37700649 |
T |
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| Q |
136 |
ctt |
138 |
Q |
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||| |
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| T |
37700648 |
ctt |
37700646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 16840622 - 16840796
Alignment:
| Q |
39 |
accaattataaaggtggtctaccgtagaactcgcgagtagagtatcga-tatccgatgacatctgatactttttctttttatatgctcaatgcattttct |
137 |
Q |
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|||| ||||||| ||||| ||| |||||||| ||||||||||||| | |||| |||||| | |||||||||||||||||||||| | | |||||||| |
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| T |
16840622 |
accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct |
16840721 |
T |
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| Q |
138 |
tttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaa |
212 |
Q |
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| T |
16840722 |
tatttgttataacaaactttgaataaattatagatttaaagaaatttttgtagtttagttaaaaactataaaaaa |
16840796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 8265959 - 8266026
Alignment:
| Q |
147 |
taacaaactttgaaaaaattataaatttaaagaaatt-tttgtagtttagttaagaaccatacaaaaa |
213 |
Q |
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||||||| ||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||| |||| |
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| T |
8265959 |
taacaaaatttgagaaaattataaatttaaagaaattgtatgtagttaagttaagaatcatacgaaaa |
8266026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 182
Target Start/End: Original strand, 21595127 - 21595162
Alignment:
| Q |
147 |
taacaaactttgaaaaaattataaatttaaagaaat |
182 |
Q |
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| T |
21595127 |
taacaaactttgaaaaaattatgaatttaaagaaat |
21595162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 2125168 - 2125101
Alignment:
| Q |
147 |
taacaaactttgaaaaaattataaatttaaagaaatttttgt-agtttagttaagaaccatacaaaaa |
213 |
Q |
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||||||||||||| ||||||||||||||||| |||| | || | |||||||||||||||||| |||| |
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| T |
2125168 |
taacaaactttgagaaaattataaatttaaaaaaatcatggtgaatttagttaagaaccatacgaaaa |
2125101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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