View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2100_low_4 (Length: 461)

Name: NF2100_low_4
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2100_low_4
NF2100_low_4
[»] chr5 (19 HSPs)
chr5 (18-449)||(8548164-8548595)
chr5 (18-223)||(8677633-8677838)
chr5 (22-331)||(8535225-8535530)
chr5 (22-238)||(9074797-9075010)
chr5 (18-223)||(8636695-8636900)
chr5 (18-223)||(8644040-8644245)
chr5 (143-332)||(1600478-1600666)
chr5 (127-219)||(8528778-8528870)
chr5 (102-183)||(8641242-8641323)
chr5 (128-194)||(2845207-2845273)
chr5 (128-194)||(2857028-2857094)
chr5 (128-214)||(9003307-9003393)
chr5 (128-194)||(2874638-2874704)
chr5 (291-373)||(9075030-9075112)
chr5 (263-415)||(8528602-8528754)
chr5 (128-196)||(2905127-2905195)
chr5 (369-412)||(8641062-8641105)
chr5 (370-415)||(1600667-1600712)
chr5 (352-404)||(8643888-8643940)
[»] chr6 (1 HSPs)
chr6 (18-315)||(16716086-16716392)
[»] scaffold0627 (1 HSPs)
scaffold0627 (18-223)||(4488-4692)
[»] chr7 (2 HSPs)
chr7 (27-194)||(35779694-35779861)
chr7 (127-317)||(48362031-48362223)
[»] chr1 (1 HSPs)
chr1 (91-220)||(5130637-5130766)
[»] chr4 (3 HSPs)
chr4 (127-219)||(9442939-9443031)
chr4 (263-396)||(9442782-9442915)
chr4 (22-110)||(9443048-9443136)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 8548164 - 8548595
Alignment:
Q  18 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8548164 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagtcaaagattttcgaattcatggctcttct 8548263  T
Q  118 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 217  Q
    ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548264 tcacaatcatttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 8548363  T
Q  218 aagaatattgtagcttctaatttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548364 aagaatattgtagcttctaatttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataaga 8548463  T
Q  318 tgagtattcaaagggtcatgtgtgaattttttgtgttactgcttatatttaaacttcctattttggcattctatttggataaaggaaggcttgttgtttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  8548464 tgagtattcaaagggtcatgtgtgaattttttgtgttactgcttatatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttaa 8548563  T
Q  418 gtacagatcttctcacttaaggttatgatgat 449  Q
    ||||||||||||||||||||||||||||||||    
T  8548564 gtacagatcttctcacttaaggttatgatgat 8548595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 8677838 - 8677633
Alignment:
Q  18 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 117  Q
    ||||||||||||| |||||||||||||||| |   ||||| |||  |||||| | ||||| ||| ||||  | |||| |||||||||||| ||| |||||    
T  8677838 agagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaagtttttcgaattcacggcacttct 8677739  T
Q  118 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 217  Q
    || ||||   ||||| |||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||    
T  8677738 tccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt 8677639  T
Q  218 aagaat 223  Q
    ||||||    
T  8677638 aagaat 8677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 8535530 - 8535225
Alignment:
Q  22 ggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttcttcag 121  Q
    ||||||||| |||||||||||||||| |   |||||||||  |||||| | || || ||||||||| |  ||| |||||||||| | ||   |  ||||     
T  8535530 ggtgctgccatattgttatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaa 8535431  T
Q  122 aatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaaga 221  Q
    | |  ||||||||||| ||| | |||||||||||||| ||||||||||||||  ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  8535430 atttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaaga 8535331  T
Q  222 atattgtagcttcta--atttaatatttcagattgggcaatctaatctgatggttgatgctcccata-aaaatcatagtaattaattttaatcataagat 318  Q
    |   |||||||||||  |||| || |||   |||  |||||  ||||||||||||||||||||| || ||| ||||||||||| |||||||||||||||     
T  8535330 a---tgtagcttctaagattttattttt---att-tgcaattgaatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagac 8535238  T
Q  319 gagtattcaaagg 331  Q
    |||||||||||||    
T  8535237 gagtattcaaagg 8535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 9074797 - 9075010
Alignment:
Q  22 ggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttcttcag 121  Q
    ||||||||| |||||||||||||||  |   |||||||||  | |||| | || || ||||||||| | |||| |||||||||||||||   |  ||||     
T  9074797 ggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaa 9074896  T
Q  122 aatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaaga 221  Q
    | |  ||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  9074897 agttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaaga 9074996  T
Q  222 atattgtagcttctaat 238  Q
    |   |||||||||||||    
T  9074997 a---tgtagcttctaat 9075010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 8636900 - 8636695
Alignment:
Q  18 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 117  Q
    |||||| |||||| |||||||||||||||| |   ||||| |||  |||||| | ||||| |||  |||  | |||| |||| ||||||| ||| |||||    
T  8636900 agagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttagaattcaaggcacttct 8636801  T
Q  118 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 217  Q
    || || |   ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  8636800 tccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T
Q  218 aagaat 223  Q
     |||||    
T  8636700 tagaat 8636695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 8644245 - 8644040
Alignment:
Q  18 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 117  Q
    |||||| |||||| |||||||||||||||| |   ||||| |||  |||||| | ||| | ||| |||   | |||| |||||||||||| |||  ||||    
T  8644245 agagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaacatgctttcaaagtttttcgaattcacggcatttct 8644146  T
Q  118 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 217  Q
    || ||||   ||||| |||||||| || ||||||||||||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||| ||    
T  8644145 tccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggt 8644046  T
Q  218 aagaat 223  Q
    ||||||    
T  8644045 aagaat 8644040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 332
Target Start/End: Original strand, 1600478 - 1600666
Alignment:
Q  143 atattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaagaatattgtagcttctaatttaa 242  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||   ||||||||| ||| |      
T  1600478 atattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaagaa---tgtagcttcaaatattt 1600574  T
Q  243 tatttcagattgg----gcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaaggg 332  Q
    |||||   |||||      ||||| || ||||||| |||| ||||||| || |||||||||||||||||||||||||||  ||| |||||||||    
T  1600575 tattt-ttattggcgtttgaatctgat-tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaaggg 1600666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 8528870 - 8528778
Alignment:
Q  127 tttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 219  Q
    ||||||||||| ||| | |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  8528870 tttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 8528778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 8641323 - 8641242
Alignment:
Q  102 aattcatggctcttcttcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaagga 183  Q
    |||||||||  ||| |||||||  | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8641323 aattcatgggacttgttcagaaagagttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 2845207 - 2845273
Alignment:
Q  128 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 194  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  2845207 ttgaagtaattgaatatattccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2845273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 2857028 - 2857094
Alignment:
Q  128 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 194  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  2857028 ttgaagtaattgaatatattccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2857094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 9003393 - 9003307
Alignment:
Q  128 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaa 214  Q
    |||||||||||||| |||||||||||||||||||||||||||| |   | || ||||||||| |||||||| ||||| || ||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaa 9003307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 2874638 - 2874704
Alignment:
Q  128 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 194  Q
    |||||||||||  |||||||| ||||||||| |||||||| |||||| |||||||||||||| ||||    
T  2874638 ttgaagtaattgaatatattcaaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2874704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 9075030 - 9075112
Alignment:
Q  291 tcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgcttatatttaaactt 373  Q
    |||||||||||||||||||||||||||||||| ||||||||| |  | |||| ||| || ||||||  ||||||||| |||||    
T  9075030 tcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaactt 9075112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 415
Target Start/End: Complemental strand, 8528754 - 8528602
Alignment:
Q  263 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 362  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8528754 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 8528656  T
Q  363 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtt 415  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | |||||||    
T  8528655 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtt 8528602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 2905127 - 2905195
Alignment:
Q  128 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgagg 196  Q
    ||||||| |||| | |||||||||||||||| |||||||| |||||| |||| ||||||||| ||||||    
T  2905127 ttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaatgttgagg 2905195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 8641105 - 8641062
Alignment:
Q  369 aacttcctattttggcattctatttggataaaggaaggcttgtt 412  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||    
T  8641105 aacttcctgttttggtattctatttggataaaggaagacttgtt 8641062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 1600667 - 1600712
Alignment:
Q  370 acttcctattttggcattctatttggataaaggaaggcttgttgtt 415  Q
    ||||||||||||| |||||| |||||| |||||||| |||||||||    
T  1600667 acttcctattttgccattctgtttggagaaaggaagacttgttgtt 1600712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 8643940 - 8643888
Alignment:
Q  352 gttactgcttatatttaaacttcctattttggcattctatttggataaaggaa 404  Q
    |||||| |||| || | ||||||||||||||||||| |||||||| |||||||    
T  8643940 gttactacttacatgttaacttcctattttggcattttatttggagaaaggaa 8643888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 16716392 - 16716086
Alignment:
Q  18 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 117  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||||||| | ||  |||||||||| || ||   ||||||||||||||| | ||||    
T  16716392 agagggtgctggcgtattgttatatcattcaaatgattgttttacttactatgagcctaataaatatggtgtcaagcgttttcgaattcatgggtattct 16716293  T
Q  118 tca------------gaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaata 205  Q
     ||            | ||  ||| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||    
T  16716292 gcaaggtattttaaaggattttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaata 16716193  T
Q  206 tccactcaaagtaagaatattgtagcttctaatttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaatt 305  Q
    ||||||||| |||||||   | ||  || ||| | ||| |||| |||| ||||||  ||| ||||||||||   ||||||||||||||||||||||||||    
T  16716192 tccactcaaggtaagaa---tctaatttataactcaatttttctgatttggcaattgaatttgatggttgacagtcccataaaaatcatagtaattaatt 16716096  T
Q  306 ttaatcataa 315  Q
    ||||| ||||    
T  16716095 ttaattataa 16716086  T

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Target: scaffold0627 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 4692 - 4488
Alignment:
Q  18 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 117  Q
    |||||||||||| ||||||||| |||||||||  ||| ||||||||||||||  ||   || ||||| |||| ||   |||||||||||||||   ||||    
T  4692 agagggtgctgctgtattgttacatcattcatatgatcgttttacttactatggccta-atgaatatcgagtcaagttttttcgaattcatggggattct 4594  T
Q  118 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 217  Q
      || ||  ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| ||    
T  4593 aaaggatattttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggt 4494  T
Q  218 aagaat 223  Q
    ||||||    
T  4493 aagaat 4488  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 35779861 - 35779694
Alignment:
Q  27 tgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttcttcagaatca 126  Q
    |||| ||||||||||||||||||   |||||||||  |||| | | || || |||||||||   |||| ||||||||||| |||  ||  |||| ||||     
T  35779861 tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatct 35779762  T
Q  127 tttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 194  Q
     |||||||||||||| |||||||||||||||| ||||||||||||||  | |||||||||||||||||    
T  35779761 gttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 317
Target Start/End: Original strand, 48362031 - 48362223
Alignment:
Q  127 tttgaagtaattccatatattccaagtctaatct-----cattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaaga 221  Q
    ||||||||||| ||| |||||||||||||||| |     |||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||| ||||||    
T  48362031 tttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaaga 48362130  T
Q  222 atattgtagcttc--taat--ttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataaga 317  Q
    |   |||||||||  ||||  || || |||   ||| ||||||  |||||||||||||||| || |||| || |||||||||| ||||||||||||||||    
T  48362131 a---tgtagcttccataatactttattttt---att-ggcaattgaatctgatggttgatgttctcatacaagtcatagtaatcaattttaatcataaga 48362223  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 5130766 - 5130637
Alignment:
Q  91 aaagattttcgaattcatggctcttcttcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaata 190  Q
    |||| |||||||||||||||  ||| |||| ||    |||||||||||||| ||||| |||||||||| ||| | |||||| |  |||||||||||||||    
T  5130766 aaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaata 5130667  T
Q  191 ttgaggtgctgaatatccactcaaagtaag 220  Q
    |||||||||||||||| ||||||| |||||    
T  5130666 ttgaggtgctgaatattcactcaaggtaag 5130637  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 9443031 - 9442939
Alignment:
Q  127 tttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 219  Q
    ||||||||||| | | | |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  9443031 tttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 9442939  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 9442915 - 9442782
Alignment:
Q  263 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 362  Q
    |||||||||||||||||| |  || || ||||||||||| ||| ||||||| |||||||||||||||||| | ||||| | |||  | ||||||  ||||    
T  9442915 aatctgatggttgatgcttctttacaagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttac-actta 9442817  T
Q  363 ta-tttaaacttcctattttggcattctatttgga 396  Q
    || ||||||||| |||||||| ||||| |||||||    
T  9442816 tattttaaacttactattttgccattccatttgga 9442782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 9443136 - 9443048
Alignment:
Q  22 ggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatgg 110  Q
    ||||||||| |||||| ||||||||| ||  |||||||||| |||||  | || || ||||||||  | |||| |||||||||||||||    
T  9443136 ggtgctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgg 9443048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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