View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100_low_5 (Length: 428)
Name: NF2100_low_5
Description: NF2100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 38522876 - 38522479
Alignment:
| Q |
22 |
atgctatctcatctaagcg-----cgctattgaattggttaaattatttataggtattttatattttttaaagattgattgttccctacaaaaaagattg |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
38522876 |
atgctatctcatctaagcggtaagcgctattgaattggttaaattatttataggtattttatattttttaa-gattgattgttcccaacaaaaa-gattg |
38522779 |
T |
|
| Q |
117 |
taagattgtcgacacattcatcattttaatttttaatctttaacgatcctctgttaatttaaaatgaatacatatcccaatagattgagtgaaacacggg |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522778 |
taagattgtcgacacattcaccattttaatttttaatctttaacgatcctctgttaatttaaaatgaatacatatcccaatagattgagtgaaacacggg |
38522679 |
T |
|
| Q |
217 |
attgaactatgttccactgtctgaccaaacaaagagtgaaacaaataaagaggtgggacatagcaataaagtccttcttcattcagtacaaattttccac |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522678 |
attgaactatgttccactgtctgaccaaacaaagagtgaaacaaataaagaggtgggacatagcaataaagtccttcttcattcagtacaaattttccac |
38522579 |
T |
|
| Q |
317 |
accgtcggtttcacttttagtttcttctaactcaataatctccgctaattttgtctatttttgaggataattataatccaaaccaaacatcatgtgcttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522578 |
accgtcggtttcacttttagtttcttctaactcaataatctccgctaattttgtctatttttgaggataattataatccaaaccaaacatcatgtgcttc |
38522479 |
T |
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