View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2226-Insertion-1 (Length: 832)
Name: NF2226-Insertion-1
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 820
Target Start/End: Original strand, 9728059 - 9728868
Alignment:
| Q |
8 |
ataacgaaaccatatggatggacctaattaaccttctgtaactctaggaatcattttagaatattgatactgaagattaaattgatacagaaatataatt |
107 |
Q |
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| T |
9728059 |
ataacgaaaccatatggatggacctaattaaccttctgtaactctagggatcattttagaatattgatactgaagattaaattgatacagaaatataatt |
9728158 |
T |
|
| Q |
108 |
ttagaaaccaaattaaatacttattcagacatgtggtgaatatgcctttaaatttgtgagcgtgagtttttagtttctcgcagtgattatttgaataagt |
207 |
Q |
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| T |
9728159 |
ttagaaaccaaattaaatacttatttggacatgtggtgaatatgcctttaaatttgtgagagtgagtttttagtttctcgcagtgattatttgaataagt |
9728258 |
T |
|
| Q |
208 |
ttgcaaggtcattcgaatcatgttacaaaattttgcttatgaacccacttaaactggtctaatagtgttgccttaagaccttgtagttcgtggaaaacac |
307 |
Q |
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| T |
9728259 |
ttgcaaggtcattcgaatcatgttacaaaattttgcttatgaatccacttaaactagtctaatagtgttgccttaagaccttgtagtacgtggaaaacac |
9728358 |
T |
|
| Q |
308 |
taaatggaatcaaggtttcatgttgagagagattaattaagagcaaatttggattgggaaatatgttttaaacaccttaggtaattaataataattaaga |
407 |
Q |
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| T |
9728359 |
taaatggaatcaaggtttcatgttgagagagattaattaagagcaattttggattgggaaatatgttttaaacaccttaggtaattaataataattaaga |
9728458 |
T |
|
| Q |
408 |
aaagattttaagctttctctatggaatcccaaagtgaaaatcatggaggattgaaaggaaaatagagagattaatattcatcttgaacaattgagatcga |
507 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9728459 |
aaaggttttaagctttctctatggaatcccaaagtgaaaatcatggaggattgaaagaaaaatagagagattaatattcatcttcaacaattgagatcga |
9728558 |
T |
|
| Q |
508 |
tttcttgtaannnnnnngtatctattgtaaagactcattgattgttgatagaagagctaatctagactattttttgaggctacattattctactactcta |
607 |
Q |
| |
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| T |
9728559 |
tttcttgtaatttttttgtatctattgtaaagactcgttga-aatctctccaccag---acgtagactattttttgagcctacattattctactactcta |
9728654 |
T |
|
| Q |
608 |
tttttatttgctaaatcgtttaatttgtttgtcattgttatttattctacttttcttgtcgaatgtgcgtgtctataatagagacaaatt-agtataaca |
706 |
Q |
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| T |
9728655 |
tttttatttgctaaatcgtttaatttgtttgtcattgttatttattctacttttcttgtcgaatgtgcatgtctataatagagacaaattaagtataata |
9728754 |
T |
|
| Q |
707 |
cgtcaaaatatatttagattttttagacacatcaaagacacacaatccattatagatagggaaatgcatatttgtttacaagctaatggcactatatagc |
806 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728755 |
cgtcaaaatatatttagattttttcaacacatcaaagacacacaatccattatagatagggaaatgcatatttgtttacaagctaatggcactatatagc |
9728854 |
T |
|
| Q |
807 |
ataacctacccaac |
820 |
Q |
| |
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||| |||||||||| |
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| T |
9728855 |
atagcctacccaac |
9728868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 5630653 - 5630737
Alignment:
| Q |
376 |
taaacaccttaggtaattaataataattaagaaaagattttaagctttctctatggaatcccaaagtgaaaatcatggaggattga |
461 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||| | |||||||||||| |||| |||| |
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| T |
5630653 |
taaacaccttaggtaattatgaataattagagaaagattc-aagctttctctattgaatcctagagtgaaaatcattgagggttga |
5630737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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