View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226-Insertion-2 (Length: 774)
Name: NF2226-Insertion-2
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 8 - 767
Target Start/End: Original strand, 14271478 - 14272224
Alignment:
| Q |
8 |
acatttcccactaaacacataccccaattgagccaccacaatgaaccaccatgagccattaagactcaccgcagcacccaccaatccccacccaaattta |
107 |
Q |
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| T |
14271478 |
acatttcccactaaacacataccccaattgagccaccacaatgaaccaccatgagccattaagactcaccgcagcacccaccaatccccacccaaattta |
14271577 |
T |
|
| Q |
108 |
accatcaacaaccaactaaacaccggatgcaacaccattgccactcccgatataaccgcgatgacaatcaccatgctttgcgcttgtagaaatttcgcga |
207 |
Q |
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| T |
14271578 |
accatcagcaaccaactaaacaccggatgcaacaccattgccactcccgatataaccgcgatgacaatcaccatgctttgcgcttgtagaaatttcgcga |
14271677 |
T |
|
| Q |
208 |
caggaaaactcagcgcgtaagcaaataattgtggaatcatatataaagcaaatgttcctgcagcctcggatatttcagttgtttgtcctatgaattttag |
307 |
Q |
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| T |
14271678 |
caggaaaattcagcgcgtaagcaaataattgtggaatcatatataaagcgaatgttcctgcggcctcggatatttcagttgtttgtcctatgaattttag |
14271777 |
T |
|
| Q |
308 |
aacggatccggcgaagatgtataaaaggcatagtggaaatgccatggaaaatagtatcacccatgatctttgcatgtatattcctaacatgtcgagtttt |
407 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14271778 |
aatggatccggcgaagatgtataaaaggcatagtggaaatgccatggaaaatagtatcacccatgatctttgcatgtatattcctaacatgtcgagtttt |
14271877 |
T |
|
| Q |
408 |
ccagctcctactgcttgtccacatagtgtttcgagcgcgcttcccatcccaagctgtttgaaaatcaaatcaaggaaggtgaagggagctcgaa-tttac |
506 |
Q |
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| T |
14271878 |
cctgctcctactgcttgtccacatagtgtttcgagcgcgcttcccatcccaagctgtttgaaaatcaaatcaaggaaggtgaagcgagctcgaattttac |
14271977 |
T |
|
| Q |
507 |
attattattactaataatataaattactaacatttgcgatt-nnnnnnnttatgtcatttgatacaaagaaatttaatcacaaagtccacaaagcaatag |
605 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14271978 |
attatt----------------attactaacatttgcgattaaaaaaaattatgttatttgatacaaagaaatttaatcacaaagtccacaaagcaatag |
14272061 |
T |
|
| Q |
606 |
ctatacaattttaatacagagaatcatcattgaatactatctttgaccgaaattaaataactttatttttacttgattggctacaaaacactactataaa |
705 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14272062 |
ctatacaatttttatagagagaatcatcattgaatactatctttgaccgaaatcaaataactttatttttacttgattggctacaaaacactactataaa |
14272161 |
T |
|
| Q |
706 |
aaagtt-aaaaagtatgtgtttagtatacagtttgcactgaagaatcacgtttaaacgcatct |
767 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
14272162 |
aaagttaaaaaagtatgtgtttggtatacagtttgcactcaagaatcacgtttaaacacatct |
14272224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 363 - 457
Target Start/End: Original strand, 29112155 - 29112249
Alignment:
| Q |
363 |
atcacccatgatctttgcatgtatattcctaacatgtcgagttttccagctcctactgcttgtccacatagtgtttcgagcgcgcttcccatccc |
457 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||||||||||| || | |||||||||||||| |
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| T |
29112155 |
atcaaccatgatctttgcatgtatattcctaacatgtctagtttccctgctccgaaagcttgtccacatagtgtctccaatgcgcttcccatccc |
29112249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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