View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226-Insertion-4 (Length: 684)
Name: NF2226-Insertion-4
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 7 - 684
Target Start/End: Complemental strand, 21371885 - 21371208
Alignment:
| Q |
7 |
agcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371885 |
agcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagt |
21371786 |
T |
|
| Q |
107 |
ccaataattttactattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccag |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371785 |
ccaataattttactattaaacatagtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccag |
21371686 |
T |
|
| Q |
207 |
cagcattttcaacaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccataacgtggacctaataggtcacaaattgcacc |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21371685 |
cagcattttcaacaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccataacgcggacctaataggtcacaaattgcacc |
21371586 |
T |
|
| Q |
307 |
cattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggactttgtgaggttaaggttgtcccggatgatcgggact |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21371585 |
cattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggattttgtgaggttaaggttgtcccggatgatcgggact |
21371486 |
T |
|
| Q |
407 |
aaaggtgctgccgcgaatgtcgatacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttga |
506 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371485 |
aaaggtgctgccgcgaatgtcgagacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttga |
21371386 |
T |
|
| Q |
507 |
aaactttcgatttgtgttcagaatcaactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttc |
606 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371385 |
aaactttggatttgtgttcagaatcaactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttc |
21371286 |
T |
|
| Q |
607 |
tcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgttatagctgtttttagtaatga |
684 |
Q |
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| T |
21371285 |
tcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgatatagctgtttttagtaatga |
21371208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 7 - 684
Target Start/End: Original strand, 21385672 - 21386349
Alignment:
| Q |
7 |
agcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385672 |
agcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagt |
21385771 |
T |
|
| Q |
107 |
ccaataattttactattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccag |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385772 |
ccaataattttactattaaacatagtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccag |
21385871 |
T |
|
| Q |
207 |
cagcattttcaacaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccataacgtggacctaataggtcacaaattgcacc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21385872 |
cagcattttcaacaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccataacgcggacctaataggtcacaaattgcacc |
21385971 |
T |
|
| Q |
307 |
cattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggactttgtgaggttaaggttgtcccggatgatcgggact |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21385972 |
cattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggattttgtgaggttaaggttgtcccggatgatcgggact |
21386071 |
T |
|
| Q |
407 |
aaaggtgctgccgcgaatgtcgatacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttga |
506 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386072 |
aaaggtgctgccgcgaatgtcgagacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttga |
21386171 |
T |
|
| Q |
507 |
aaactttcgatttgtgttcagaatcaactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttc |
606 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386172 |
aaactttggatttgtgttcagaatcaactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttc |
21386271 |
T |
|
| Q |
607 |
tcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgttatagctgtttttagtaatga |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21386272 |
tcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgatatagctgtttttagtaatga |
21386349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 48674164 - 48674302
Alignment:
| Q |
71 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaag |
170 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||| ||||||||||||||| | |||||||| |||||||||| |
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| T |
48674164 |
atattaccccaaccagcagcagtcccattaacaagtccaataatcttcctattaaacat---actcatccaatattggtaagaaacaaaagttgccaaag |
48674260 |
T |
|
| Q |
171 |
agaaaccaatcataaacctaactgctatataaccagcagcat |
212 |
Q |
| |
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||||||||||||| ||||||||||||||| | |||| ||||| |
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|
| T |
48674261 |
agaaaccaatcatgaacctaactgctatacatccagaagcat |
48674302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 119 - 276
Target Start/End: Complemental strand, 36199965 - 36199810
Alignment:
| Q |
119 |
ctattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcat-tttca |
217 |
Q |
| |
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||||||||| | ||||| ||| |||||| || |||||||| ||||| ||||| ||||||||||| ||||||||| ||||||| |||| ||||| |||| |
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| T |
36199965 |
ctattaaacgtcttactcgtccgatattggcaagaaacaaaagttgctaaagacaaaccaatcatgaacctaactactatatatccagaagcatcattca |
36199866 |
T |
|
| Q |
218 |
acaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccata |
276 |
Q |
| |
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|||||| ||||||||| ||||||| || | |||||||||||| || ||||||||||| |
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|
| T |
36199865 |
--aaatgaaatacaaaac-ctgttggagcagatagcattataagtaaagcacaaccata |
36199810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 691421 - 691479
Alignment:
| Q |
71 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacat |
129 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||| || | ||||||||| |
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|
| T |
691421 |
atattaccccaaccagcagcagtcccattgacaagtccaataatcttccaattaaacat |
691479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 693213 - 693271
Alignment:
| Q |
71 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacat |
129 |
Q |
| |
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|||||||||| |||||||||||| |||||| ||||||||| ||| | ||||||||||| |
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| T |
693213 |
atattaccccgaccagcagcagtcccattaacaagtccaacaatcctcctattaaacat |
693271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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