View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226-Insertion-5 (Length: 486)
Name: NF2226-Insertion-5
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226-Insertion-5 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 13964 - 13486
Alignment:
| Q |
8 |
atttgagttgtgtttggtcgaaaattttatgatatggtgaggtgatttgatccatagaatatctttgttcagtcacttgatttctgagaaaatcatgaca |
107 |
Q |
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| T |
13964 |
atttgagttgtgtttggtcgaaaattttatgatatggtgaggtgatttgatccatagaatatctttgttcagtcacttgatttctgagaaaatcatgaca |
13865 |
T |
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| Q |
108 |
atgaaaaatggtattatgttttagagttttatgatgtttatgctttttgaaatgtttttggtggtgagggtattctcaaagattgtgttatattaatgta |
207 |
Q |
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| T |
13864 |
atgaaaaatggtattatgttttagagttttatgatgtttatgctttttgaagtgtttttggtggtgagggtattctcaaagattgtgttatattaatgta |
13765 |
T |
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| Q |
208 |
tcattggattatgcatctttggattgttatagaatttgtgtttttatttttagtgaaaatgtgtgttgaaggnnnnnnncaatggacttgatgttagtat |
307 |
Q |
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| T |
13764 |
tcattggattatgcatctttggattgttatagaatttgtgtttttatttttagtgaaaatgtgtgttgaaggaaaaaaacaatggacttgatgttagtat |
13665 |
T |
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| Q |
308 |
tttgtaaacattggtattcaatgatattagagtctagaacacaattgcaccaacataatcaagtcttttatttgttgagtttggagggtactttttgaat |
407 |
Q |
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| T |
13664 |
tttgtaaacattggtattcaatgatattagagtctagaacacaattgcaccaacataatcaagtcttttatttgttgagtttggagagtactttttgaat |
13565 |
T |
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| Q |
408 |
gtaacattggtttatttatgctaaaggaatnnnnnnnnnnnntcatctcctgaattgtgaaaagtttgagaatctgaaa |
486 |
Q |
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| T |
13564 |
gtaacattggtttatttatgctaaaggaataaaaaagaaaaatcatctcctgaattgtgaaaagtttgagaatctgaaa |
13486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 22310321 - 22310436
Alignment:
| Q |
305 |
tattttgtaaacattggtattcaatgatattagagtctagaacacaattgcaccaacataatcaagtcttttatttgttgag-tttggagggtacttttt |
403 |
Q |
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| T |
22310321 |
tattttgtaaacattggtatttaatgatattagaagctagaacacaattgcaccaacataatgaagtttgatatttgttgagttttggagagtaatttat |
22310420 |
T |
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| Q |
404 |
gaatgtaacattggtt |
419 |
Q |
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| T |
22310421 |
gaatgtaacattggtt |
22310436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 22310441 - 22310491
Alignment:
| Q |
387 |
tttggagggtactttttgaatgtaacattggtttatttatgctaaaggaat |
437 |
Q |
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| T |
22310441 |
tttggagagtaatttatgaatgtaacattggttgagttatgctaaaggaat |
22310491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 27261852 - 27261725
Alignment:
| Q |
118 |
gtattatgttttagagttttatgatgtttatgctttttgaaatgtttttggtggtgagggtattctcaaa-gattgtgttatattaatgtatcattggat |
216 |
Q |
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| T |
27261852 |
gtatcatgtttaatagttttatgatatttatgatttgggaattttttttggtgttgaaggtattctcaaaagattgtattagattaatgtatcattggat |
27261753 |
T |
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| Q |
217 |
tatgcatctttggattgttatagaattt |
244 |
Q |
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| T |
27261752 |
tatgcatatttggattgttaaagaattt |
27261725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 32447756 - 32447676
Alignment:
| Q |
8 |
atttgagttgtgtttggtcgaaaattttatgatatggtgaggtgatttgatccatagaatatctttgttcagtcacttgat |
88 |
Q |
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| T |
32447756 |
atttgagttgtgtttggtttagtattttatgacatgttgaggtgatctgattcatagaatatttttgttcactcacctgat |
32447676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 32447569 - 32447502
Alignment:
| Q |
162 |
tttttggtggtgagggtattctcaaa-gattgtgttatattaatgtatcattggattatgcatctttg |
228 |
Q |
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| T |
32447569 |
ttttgggtgttgaaggtattctcaaaagattgtattagattaatgtatcattggattatgcatatttg |
32447502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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