View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2226-Insertion-6 (Length: 307)
Name: NF2226-Insertion-6
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226-Insertion-6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 3879872 - 3880171
Alignment:
| Q |
8 |
gaatctttgacaaattctatatgtggtgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaacaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879872 |
gaatctttgacaaattctatatgtgatgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaacaaa |
3879971 |
T |
|
| Q |
108 |
tatttcttttgaatttctggatttattttccaaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaataagtgttttcct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879972 |
tatttcttttgaatttctggatttattttccaaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaataagtgttttcct |
3880071 |
T |
|
| Q |
208 |
actcttgatcgcttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcgtgtgatttttat |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3880072 |
actcttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcttgtgatttttat |
3880171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 3865896 - 3865991
Alignment:
| Q |
8 |
gaatctttgacaaattctatatgtggtgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaa |
103 |
Q |
| |
|
||||| |||||||| || |||||| ||||||| |||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3865896 |
gaatcattgacaaacactgtatgtgatgtttttagtgacggtggaggatgtcccatgttgaaatcactagttcttgataattgtgaggtacatgaa |
3865991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9949 times since January 2019
Visitors: 7932