View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2226-Insertion-8 (Length: 66)

Name: NF2226-Insertion-8
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2226-Insertion-8
NF2226-Insertion-8
[»] chr8 (2 HSPs)
chr8 (8-66)||(9439440-9439498)
chr8 (8-66)||(9444160-9444218)
[»] chr7 (4 HSPs)
chr7 (8-66)||(16183699-16183757)
chr7 (20-66)||(30235226-30235271)
chr7 (12-56)||(8140041-8140085)
chr7 (8-51)||(8138542-8138585)
[»] chr6 (6 HSPs)
chr6 (8-66)||(1234892-1234950)
chr6 (8-66)||(27878777-27878835)
chr6 (8-66)||(26976199-26976257)
chr6 (8-66)||(27874058-27874116)
chr6 (8-61)||(18968068-18968121)
chr6 (8-66)||(30966843-30966901)
[»] chr5 (5 HSPs)
chr5 (8-66)||(29585368-29585426)
chr5 (8-66)||(34352439-34352497)
chr5 (8-66)||(41718601-41718659)
chr5 (8-66)||(41723327-41723385)
chr5 (8-66)||(34360147-34360205)
[»] chr4 (9 HSPs)
chr4 (8-66)||(24520093-24520151)
chr4 (8-66)||(42266094-42266152)
chr4 (8-66)||(42270813-42270871)
chr4 (8-66)||(48701889-48701947)
chr4 (8-66)||(48697199-48697258)
chr4 (8-66)||(30950251-30950308)
chr4 (12-66)||(10427475-10427529)
chr4 (8-66)||(30945545-30945602)
chr4 (30-66)||(1979567-1979602)
[»] chr3 (7 HSPs)
chr3 (8-66)||(5823343-5823401)
chr3 (8-66)||(5818581-5818639)
chr3 (8-66)||(24659204-24659262)
chr3 (8-66)||(2817331-2817388)
chr3 (20-66)||(4579254-4579300)
chr3 (11-56)||(54546078-54546123)
chr3 (14-56)||(31204843-31204885)
[»] chr2 (6 HSPs)
chr2 (8-66)||(5198723-5198781)
chr2 (8-66)||(15603068-15603126)
chr2 (8-66)||(830325-830384)
chr2 (8-66)||(825669-825728)
chr2 (21-65)||(13843865-13843908)
chr2 (21-66)||(28715965-28716009)
[»] scaffold0074 (1 HSPs)
scaffold0074 (8-66)||(27294-27352)
[»] chr1 (3 HSPs)
chr1 (8-65)||(46191422-46191479)
chr1 (8-56)||(4130276-4130324)
chr1 (8-56)||(30697192-30697240)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 9e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9439498 - 9439440
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439498 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 9439440  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9444218 - 9444160
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444218 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 9444160  T

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Target: chr7 (Bit Score: 59; Significance: 9e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 16183757 - 16183699
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183757 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 16183699  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 30235226 - 30235271
Alignment:
Q  20 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  30235226 ttttttccccttattcgttgaggggtttccacgt-aaatattgtgtg 30235271  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 8140085 - 8140041
Alignment:
Q  12 ccccgtggttttttccccttatttgttgaggggtttccacgtaaa 56  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||    
T  8140085 ccccatggttttctccccttatttgttgaggggtttccacataaa 8140041  T

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Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 8138585 - 8138542
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccac 51  Q
    |||||| ||||||||| ||||||| |||||| ||||||||||||    
T  8138585 cttgcctcgtggttttctccccttgtttgttaaggggtttccac 8138542  T

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Target: chr6 (Bit Score: 59; Significance: 9e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 1234892 - 1234950
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234892 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 1234950  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 27878835 - 27878777
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878835 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 27878777  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 26976257 - 26976199
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976257 cttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 26976199  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 27874116 - 27874058
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27874116 cttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtg 27874058  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 18968068 - 18968121
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatatt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18968068 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatatt 18968121  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 30966843 - 30966901
Alignment:
Q  8 cttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||| |||| || |||||||||||||| |||||||||||| ||||||||||||    
T  30966843 cttgccccgtgattttatttcccttatttgttgatgggtttccacgt-aaatattgtgtg 30966901  T

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Target: chr5 (Bit Score: 59; Significance: 9e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 29585426 - 29585368
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585426 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 29585368  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 34352439 - 34352497
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352439 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 34352497  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 41718601 - 41718659
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718601 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 41718659  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 41723327 - 41723385
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723327 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 41723385  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 34360147 - 34360205
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34360147 cttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtg 34360205  T

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Target: chr4 (Bit Score: 59; Significance: 9e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 24520151 - 24520093
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520151 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 24520093  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 42266094 - 42266152
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266094 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 42266152  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 42270813 - 42270871
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270813 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 42270871  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 48701947 - 48701889
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701947 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 48701889  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 48697258 - 48697199
Alignment:
Q  8 cttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48697258 cttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 48697199  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 30950308 - 30950251
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30950308 cttgccccgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtg 30950251  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 10427475 - 10427529
Alignment:
Q  12 ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10427475 ccccgtagttttttccccttatttgttgaggggtttccgcgtaaaatattgtgtg 10427529  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 30945602 - 30945545
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  30945602 cttgccccgtgattttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtg 30945545  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 1979567 - 1979602
Alignment:
Q  30 ttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||| ||||||||||||    
T  1979567 ttatttgttgaggggtttccacgt-aaatattgtgtg 1979602  T

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Target: chr3 (Bit Score: 59; Significance: 9e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5823401 - 5823343
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823401 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 5823343  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5818639 - 5818581
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5818639 cttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtg 5818581  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 24659262 - 24659204
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24659262 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtg 24659204  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 2817388 - 2817331
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2817388 cttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtg 2817331  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4579254 - 4579300
Alignment:
Q  20 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4579254 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 4579300  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 54546078 - 54546123
Alignment:
Q  11 gccccgtggttttttccccttatttgttgaggggtttccacgtaaa 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  54546078 gccccgtggttttttccccttatttgttgaggggtttccacgtaaa 54546123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 31204885 - 31204843
Alignment:
Q  14 ccgtggttttttccccttatttgttgaggggtttccacgtaaa 56  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  31204885 ccgtgattttttcctcttatttgttgaggggtttccacgtaaa 31204843  T

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Target: chr2 (Bit Score: 59; Significance: 9e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5198781 - 5198723
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198781 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 5198723  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15603068 - 15603126
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603068 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 15603126  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 830325 - 830384
Alignment:
Q  8 cttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  830325 cttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 830384  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 825669 - 825728
Alignment:
Q  8 cttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  825669 cttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtg 825728  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 13843908 - 13843865
Alignment:
Q  21 tttttccccttatttgttgaggggtttccacgtaaaatattgtgt 65  Q
    |||||| |||||||||||||||||||||||||| |||||||||||    
T  13843908 tttttctccttatttgttgaggggtttccacgt-aaatattgtgt 13843865  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 28715965 - 28716009
Alignment:
Q  21 tttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||    
T  28715965 tttttccccttatttaatgaggggtttccacgt-aaatattgtgtg 28716009  T

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Target: scaffold0074 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 27352 - 27294
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27352 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaagtattgtgtg 27294  T

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Target: chr1 (Bit Score: 54; Significance: 9e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-23
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 46191422 - 46191479
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46191422 cttgtcccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt 46191479  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 4130276 - 4130324
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaa 56  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  4130276 cttgccccgtggttttttccctttatttgttgagggatttccacgtaaa 4130324  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 30697240 - 30697192
Alignment:
Q  8 cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaa 56  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  30697240 cttgccacgtggctttttccccttatttgttgaggggtttccacgtaaa 30697192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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