View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226_high_1 (Length: 725)
Name: NF2226_high_1
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 3239375 - 3238935
Alignment:
| Q |
1 |
cttctcttgtattctttcattcattttagattttgcatttgaaactcaatttcttatgccattttgatacttccctatatgaaattataagaaaaaagaa |
100 |
Q |
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| T |
3239375 |
cttctcttgtattctttcattcattttagattttgcatttgaaactcaatttcttatgccattttgatacttccctatatgaaattataagaaaaaagga |
3239276 |
T |
|
| Q |
101 |
aattaaacaaaggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcatataatgatgagaaatggatccaaaatcaatggcttctg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3239275 |
aattgaacaaaggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcata--atgatgagaaatggatccaaaatcaatggcttctg |
3239178 |
T |
|
| Q |
201 |
gatttgaaggaataaccatcttcctcatttcaatgtttttatagctccttcaacatcttaattctcttcaaaggtactcctattgttttatttatttttt |
300 |
Q |
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| T |
3239177 |
gatttgaaggaataaccatcttcctcatttcaatgtttttatagctccttcaacgtcttaattctcttcaaaggtactcctattgttttatttattttat |
3239078 |
T |
|
| Q |
301 |
ctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatct |
400 |
Q |
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| T |
3239077 |
ctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatct |
3238978 |
T |
|
| Q |
401 |
tcaatcattcatattatagactaatataggaaaggttcctctt |
443 |
Q |
| |
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| T |
3238977 |
tcaatcattcatattatagactaatataggaaaggttcctctt |
3238935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 428 - 715
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
428 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
527 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
|
| Q |
528 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
|
| Q |
628 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
715 |
Q |
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| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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