View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2226_high_9 (Length: 204)

Name: NF2226_high_9
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2226_high_9
NF2226_high_9
[»] chr1 (13 HSPs)
chr1 (16-189)||(28231435-28231608)
chr1 (16-155)||(28239042-28239181)
chr1 (16-138)||(47569149-47569271)
chr1 (16-142)||(677199-677325)
chr1 (76-134)||(6326786-6326844)
chr1 (76-138)||(14508844-14508906)
chr1 (64-127)||(21159167-21159230)
chr1 (76-138)||(671025-671087)
chr1 (55-134)||(2289006-2289082)
chr1 (96-153)||(23787015-23787072)
chr1 (96-153)||(24621795-24621852)
chr1 (78-126)||(28326317-28326365)
chr1 (97-138)||(4251618-4251659)
[»] chr5 (1 HSPs)
chr5 (76-138)||(1717879-1717941)
[»] chr3 (1 HSPs)
chr3 (76-150)||(47924945-47925019)
[»] chr2 (1 HSPs)
chr2 (75-138)||(9066272-9066335)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 28231608 - 28231435
Alignment:
Q  16 gcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagt 115  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28231608 gcaataaccatagattagatgtctatatgtgtgacaaccaggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagt 28231509  T
Q  116 ctatctttgcagagtctgaatataattgaattataacaccacatgaaattagaaatgcgatattttggtttctt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28231508 ctatctttgcagagtctgaatataattgaattataacaccacatgaaattagaaatgcgatattttggtttctt 28231435  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 28239181 - 28239042
Alignment:
Q  16 gcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagt 115  Q
    |||||||||||||| |||||| |||||||||  | ||| |||  ||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||    
T  28239181 gcaataaccatagactagatgactatatgtgcaagaatcagggctgatgttgttaacatgaatcatttcagaatacaaatcataggcttggtttacaagt 28239082  T
Q  116 ctatctttgcagagtctgaatataattgaattataacacc 155  Q
    |||||||||||||| ||| |||| ||| ||||||||||||    
T  28239081 ctatctttgcagagcctgtatatgatttaattataacacc 28239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 47569271 - 47569149
Alignment:
Q  16 gcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagt 115  Q
    ||||||||||||| |||||| |  |||||||  | ||| ||||| |||||||||||| | |||||||||||||||||| |||||||||||||| ||||||    
T  47569271 gcaataaccataggttagattttgatatgtggtataattaggctcgatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagt 47569172  T
Q  116 ctatctttgcagagtctgaatat 138  Q
    |||||||||||||||||||||||    
T  47569171 ctatctttgcagagtctgaatat 47569149  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 677325 - 677199
Alignment:
Q  16 gcaataaccatagattagatgtctatatgtgtgacaatgaggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagt 115  Q
    |||||| |||||||  ||||| | || ||||||| ||| ||| ||||| ||| |||||| |||||||||||||||||| ||||||||||| |  ||||||    
T  677325 gcaatagccatagaggagatggcaatgtgtgtgaaaatcagggttgattttggtaacatgaatcatttcagaatataaatcataggcttgatgtacaagt 677226  T
Q  116 ctatctttgcagagtctgaatataatt 142  Q
    ||||||||||||||||| |||||||||    
T  677225 ctatctttgcagagtctaaatataatt 677199  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 6326786 - 6326844
Alignment:
Q  76 aatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctga 134  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  6326786 aatcatttcagaatataaatcataggcttggtttgcaagtctatctttgcagagtctga 6326844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 14508844 - 14508906
Alignment:
Q  76 aatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatat 138  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||    
T  14508844 aatcatttcagaatataaatcataggcttggtttacacgtctatctttgcatagtctgaatat 14508906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 21159167 - 21159230
Alignment:
Q  64 gttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcag 127  Q
    ||||||||||| ||  |||||||||||||| |||||||||||||| | ||||||||||||||||    
T  21159167 gttgttaacatgaagaatttcagaatataaatcataggcttggtttataagtctatctttgcag 21159230  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 671025 - 671087
Alignment:
Q  76 aatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatat 138  Q
    |||||||||| |||||||  ||||| ||||||| ||||||||||||||||| || ||||||||    
T  671025 aatcatttcaaaatataaaccatagccttggtttacaagtctatctttgcacagcctgaatat 671087  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 2289006 - 2289082
Alignment:
Q  55 aggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctga 134  Q
    |||| ||||||||||||||   ||||||| ||||||||| |||||||||||| | ||||||||||| |||| ||| ||||    
T  2289006 aggcatgatgttgttaaca---atcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctga 2289082  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 23787072 - 23787015
Alignment:
Q  96 cataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataaca 153  Q
    ||||||||||||| |||||||| |||||| |||| |||||||| ||||| ||||||||    
T  23787072 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 23787015  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 24621795 - 24621852
Alignment:
Q  96 cataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataaca 153  Q
    ||||||||||||| |||||||| |||||| |||| |||||||| ||||| ||||||||    
T  24621795 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 24621852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 28326365 - 28326317
Alignment:
Q  78 tcatttcagaatataattcataggcttggttaacaagtctatctttgca 126  Q
    |||||||||||||||| ||||| |||||||| | |||||||||||||||    
T  28326365 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 28326317  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 4251618 - 4251659
Alignment:
Q  97 ataggcttggttaacaagtctatctttgcagagtctgaatat 138  Q
    |||||||||||| |||||||||||||||||||| ||| ||||    
T  4251618 ataggcttggtttacaagtctatctttgcagagcctggatat 4251659  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 1717941 - 1717879
Alignment:
Q  76 aatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatat 138  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  1717941 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcatagtctgaatat 1717879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 47924945 - 47925019
Alignment:
Q  76 aatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatataattgaattata 150  Q
    ||||||||||||||| || ||||||||||| || || |||||||||||||||||  ||| ||| ||||| |||||    
T  47924945 aatcatttcagaatagaagtcataggcttgatttactagtctatctttgcagagggtgagtatgattgagttata 47925019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 9066335 - 9066272
Alignment:
Q  75 aaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatat 138  Q
    |||||||||  |||||||| |||||||||||||| ||| ||||| |||| || |||||||||||    
T  9066335 aaatcatttgtgaatataaatcataggcttggtttacaggtctacctttacatagtctgaatat 9066272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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