View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226_low_10 (Length: 237)
Name: NF2226_low_10
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 10274163 - 10274274
Alignment:
| Q |
11 |
tgcatggcaggtggcttcaatagcatacactgcatcaaaactattgtcttcgaatggcatcttcatgaaatcagcctgtgttatcaaataagattaaaca |
110 |
Q |
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| T |
10274163 |
tgcatggcaggtggcttcaatagcatacactgcatcaaaactattgtcttcgaatggcatcttcatgaaatcagcctgcattatcaaataagattaagca |
10274262 |
T |
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| Q |
111 |
tatcaattatga |
122 |
Q |
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| T |
10274263 |
tgtcaattatga |
10274274 |
T |
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 3384863 - 3384940
Alignment:
| Q |
11 |
tgcatggcaggtggcttcaatagcatacactgcatcaaaactattgtcttcgaatggcatcttcatgaaatcagcctg |
88 |
Q |
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| T |
3384863 |
tgcatggcaggtggcttcaatagcatacactgcatcaaaactattgtcttcgaatggcatcttcatgaaatcagcctg |
3384940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 3384939 - 3385007
Alignment:
| Q |
155 |
tgaagaatgcatcagtcaggtcatcactataaataacatcagcagccacgagcaaggaagcattttctg |
223 |
Q |
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| T |
3384939 |
tgaagaatgcatctgtcaggtcatcactataaataacatcagcagccaggagcgaggaagcattttctg |
3385007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 43912501 - 43912402
Alignment:
| Q |
121 |
gaactccttcacattaatctctctatggtactgatgaagaatgcatcagtcaggtcatcactataaataacatcagcagccacgagcaaggaagcatttt |
220 |
Q |
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|||| |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
43912501 |
gaaccccttgacattaatctctctaaggtactga---agaatgcatcagtcaggtcatcactataaataacatcagcagccaggagcaaagaagcatttt |
43912405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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